High-Order SNP Combinations Associated with Complex Diseases: Efficient Discovery, Statistical Power and Functional Interactions
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DOI: 10.1371/journal.pone.0033531
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- Brendan Maher, 2008. "Personal genomes: The case of the missing heritability," Nature, Nature, vol. 456(7218), pages 18-21, November.
- Wei Zhang & Jun Zhu & Eric E Schadt & Jun S Liu, 2010. "A Bayesian Partition Method for Detecting Pleiotropic and Epistatic eQTL Modules," PLOS Computational Biology, Public Library of Science, vol. 6(1), pages 1-10, January.
- Zhong Wang & Tian Liu & Zhenwu Lin & John Hegarty & Walter A Koltun & Rongling Wu, 2010. "A General Model for Multilocus Epistatic Interactions in Case-Control Studies," PLOS ONE, Public Library of Science, vol. 5(8), pages 1-9, August.
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