Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction
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DOI: 10.1371/journal.pgen.1008995
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- Kaspar Märtens & Johan Hallin & Jonas Warringer & Gianni Liti & Leopold Parts, 2016. "Predicting quantitative traits from genome and phenome with near perfect accuracy," Nature Communications, Nature, vol. 7(1), pages 1-8, September.
- Agnieszka A. Golicz & Philipp E. Bayer & Guy C. Barker & Patrick P. Edger & HyeRan Kim & Paula A. Martinez & Chon Kit Kenneth Chan & Anita Severn-Ellis & W. Richard McCombie & Isobel A. P. Parkin & An, 2016. "The pangenome of an agronomically important crop plant Brassica oleracea," Nature Communications, Nature, vol. 7(1), pages 1-8, December.
- Brendan Maher, 2008. "Personal genomes: The case of the missing heritability," Nature, Nature, vol. 456(7218), pages 18-21, November.
- Joshua S. Bloom & Ian M. Ehrenreich & Wesley T. Loo & Thúy-Lan Võ Lite & Leonid Kruglyak, 2013. "Finding the sources of missing heritability in a yeast cross," Nature, Nature, vol. 494(7436), pages 234-237, February.
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