IDEAS home Printed from https://ideas.repec.org/a/plo/pcbi00/1004190.html
   My bibliography  Save this article

Metrics for Assessing Cytoskeletal Orientational Correlations and Consistency

Author

Listed:
  • Nancy K Drew
  • Mackenzie A Eagleson
  • Danny B Baldo Jr.
  • Kevin Kit Parker
  • Anna Grosberg

Abstract

In biology, organization at multiple scales potentiates biological function. Current advances in staining and imaging of biological tissues provide a wealth of data, but there are few metrics to quantitatively describe these findings. In particular there is a need for a metric that would characterize the correlation and consistency of orientation of different biological constructs within a tissue. We aimed to create such a metric and to demonstrate its use with images of cardiac tissues. The co-orientational order parameter (COOP) was based on the mathematical framework of a classical parameter, the orientational order parameter (OOP). Theorems were proven to illustrate the properties and boundaries of the COOP, which was then applied to both synthetic and experimental data. We showed the COOP to be useful for quantifying the correlation of orientation of constructs such as actin filaments and sarcomeric Z-lines. As expected, cardiac tissues showed perfect correlation between actin filaments and Z-lines. We also demonstrated the use of COOP to quantify the consistency of construct orientation within cells of the same shape. The COOP provides a quantitative tool to characterize tissues beyond co-localization or single construct orientation distribution. In the future, this new parameter could be used to represent the quantitative changes during maturation of cardiac tissue, pathological malformation, and other processes.Author Summary: Biological tissues are highly organized on multiple length scales. In tissue engineering, recreating the in vivo architecture is an important aspect of in vitro experiments. An ability to quantify organization of cellular constructs, specifically the correlation in their orientations, would greatly enhance both our understanding of the function of each construct and provide a tool to evaluate engineered tissues. In this work, we have developed a parameter to evaluate the correlation and consistency of construct orientation. We have extensively characterized this co-orientational order parameter analytically, validated it using synthetic data, and demonstrated its use with experimental data of Z-lines and actin fibrils architectures in engineered cardiac tissues. As long as the orientation angles and location of constructs are known, the parameter can quantify both orientational correlation and consistency. Thus, the co-orientational order parameter has a wide scope of application both in biology and potentially outside of it.

Suggested Citation

  • Nancy K Drew & Mackenzie A Eagleson & Danny B Baldo Jr. & Kevin Kit Parker & Anna Grosberg, 2015. "Metrics for Assessing Cytoskeletal Orientational Correlations and Consistency," PLOS Computational Biology, Public Library of Science, vol. 11(4), pages 1-22, April.
  • Handle: RePEc:plo:pcbi00:1004190
    DOI: 10.1371/journal.pcbi.1004190
    as

    Download full text from publisher

    File URL: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004190
    Download Restriction: no

    File URL: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004190&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pcbi.1004190?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Berens, Philipp, 2009. "CircStat: A MATLAB Toolbox for Circular Statistics," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 31(i10).
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. André Scholich & Simon Syga & Hernán Morales-Navarrete & Fabián Segovia-Miranda & Hidenori Nonaka & Kirstin Meyer & Walter de Back & Lutz Brusch & Yannis Kalaidzidis & Marino Zerial & Frank Jülicher &, 2020. "Quantification of nematic cell polarity in three-dimensional tissues," PLOS Computational Biology, Public Library of Science, vol. 16(12), pages 1-22, December.
    2. Jens Karschau & André Scholich & Jonathan Wise & Hernán Morales-Navarrete & Yannis Kalaidzidis & Marino Zerial & Benjamin M Friedrich, 2020. "Resilience of three-dimensional sinusoidal networks in liver tissue," PLOS Computational Biology, Public Library of Science, vol. 16(6), pages 1-22, June.
    3. Ronald Springer & Alexander Zielinski & Catharina Pleschka & Bernd Hoffmann & Rudolf Merkel, 2019. "Unbiased pattern analysis reveals highly diverse responses of cytoskeletal systems to cyclic straining," PLOS ONE, Public Library of Science, vol. 14(3), pages 1-23, March.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Joshua M. Diamond & Julio I. Chapeton & Weizhen Xie & Samantha N. Jackson & Sara K. Inati & Kareem A. Zaghloul, 2024. "Focal seizures induce spatiotemporally organized spiking activity in the human cortex," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    2. Kyerl Park & Yoonsoo Yeo & Kisung Shin & Jeehyun Kwag, 2024. "Egocentric neural representation of geometric vertex in the retrosplenial cortex," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    3. Jennifer B Tennessen & Marla M Holt & Brianna M Wright & M Bradley Hanson & Candice K Emmons & Deborah A Giles & Jeffrey T Hogan & Sheila J Thornton & Volker B Deecke, 2023. "Divergent foraging strategies between populations of sympatric matrilineal killer whales," Behavioral Ecology, International Society for Behavioral Ecology, vol. 34(3), pages 373-386.
    4. Thomas Schreiner & Marit Petzka & Tobias Staudigl & Bernhard P. Staresina, 2023. "Respiration modulates sleep oscillations and memory reactivation in humans," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    5. Thomas Schreiner & Elisabeth Kaufmann & Soheyl Noachtar & Jan-Hinnerk Mehrkens & Tobias Staudigl, 2022. "The human thalamus orchestrates neocortical oscillations during NREM sleep," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    6. Celia M. Gagliardi & Marc E. Normandin & Alexandra T. Keinath & Joshua B. Julian & Matthew R. Lopez & Manuel-Miguel Ramos-Alvarez & Russell A. Epstein & Isabel A. Muzzio, 2024. "Distinct neural mechanisms for heading retrieval and context recognition in the hippocampus during spatial reorientation," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
    7. Alireza Saeedi & Kun Wang & Ghazaleh Nikpourian & Andreas Bartels & Nikos K. Logothetis & Nelson K. Totah & Masataka Watanabe, 2024. "Brightness illusions drive a neuronal response in the primary visual cortex under top-down modulation," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    8. Arthur Pewsey & Eduardo García-Portugués, 2021. "Recent advances in directional statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 1-58, March.
    9. Thomas Schreiner & Benjamin J. Griffiths & Merve Kutlu & Christian Vollmar & Elisabeth Kaufmann & Stefanie Quach & Jan Remi & Soheyl Noachtar & Tobias Staudigl, 2024. "Spindle-locked ripples mediate memory reactivation during human NREM sleep," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    10. César Henrique Mattos Pires & Felipe M. Pimenta & Carla A. D'Aquino & Osvaldo R. Saavedra & Xuerui Mao & Arcilan T. Assireu, 2020. "Coastal Wind Power in Southern Santa Catarina, Brazil," Energies, MDPI, vol. 13(19), pages 1-23, October.
    11. Alexis T Baria & Brian Maniscalco & Biyu J He, 2017. "Initial-state-dependent, robust, transient neural dynamics encode conscious visual perception," PLOS Computational Biology, Public Library of Science, vol. 13(11), pages 1-29, November.
    12. Matthijs J. Warrens & Bunga C. Pratiwi, 2016. "Kappa Coefficients for Circular Classifications," Journal of Classification, Springer;The Classification Society, vol. 33(3), pages 507-522, October.
    13. Lombard, F. & Hawkins, Douglas M. & Potgieter, Cornelis J., 2017. "Sequential rank CUSUM charts for angular data," Computational Statistics & Data Analysis, Elsevier, vol. 105(C), pages 268-279.
    14. Masataka Sawayama & Shin'ya Nishida, 2018. "Material and shape perception based on two types of intensity gradient information," PLOS Computational Biology, Public Library of Science, vol. 14(4), pages 1-40, April.
    15. Aguiar-Conraria, Luis & Martins, Manuel M.F. & Soares, Maria Joana, 2018. "Estimating the Taylor rule in the time-frequency domain," Journal of Macroeconomics, Elsevier, vol. 57(C), pages 122-137.
    16. Assaf Breska & Leon Y Deouell, 2017. "Neural mechanisms of rhythm-based temporal prediction: Delta phase-locking reflects temporal predictability but not rhythmic entrainment," PLOS Biology, Public Library of Science, vol. 15(2), pages 1-30, February.
    17. Sunny Nigam & Russell Milton & Sorin Pojoga & Valentin Dragoi, 2023. "Adaptive coding across visual features during free-viewing and fixation conditions," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    18. Chinnakkaruppan Adaikkan & Justin Joseph & Georgios Foustoukos & Jun Wang & Denis Polygalov & Roman Boehringer & Steven J. Middleton & Arthur J. Y. Huang & Li-Huei Tsai & Thomas J. McHugh, 2024. "Silencing CA1 pyramidal cells output reveals the role of feedback inhibition in hippocampal oscillations," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    19. Daniel S. Kluger & Carina Forster & Omid Abbasi & Nikos Chalas & Arno Villringer & Joachim Gross, 2023. "Modulatory dynamics of periodic and aperiodic activity in respiration-brain coupling," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    20. Manuela Costa & Diego Lozano-Soldevilla & Antonio Gil-Nagel & Rafael Toledano & Carina R. Oehrn & Lukas Kunz & Mar Yebra & Costantino Mendez-Bertolo & Lennart Stieglitz & Johannes Sarnthein & Nikolai , 2022. "Aversive memory formation in humans involves an amygdala-hippocampus phase code," Nature Communications, Nature, vol. 13(1), pages 1-16, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1004190. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.