Stimulus-dependent Maximum Entropy Models of Neural Population Codes
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.1002922
Download full text from publisher
References listed on IDEAS
- S. Nirenberg & S. M. Carcieri & A. L. Jacobs & P. E. Latham, 2001. "Retinal ganglion cells act largely as independent encoders," Nature, Nature, vol. 411(6838), pages 698-701, June.
- Kenneth D. Harris & Jozsef Csicsvari & Hajime Hirase & George Dragoi & György Buzsáki, 2003. "Organization of cell assemblies in the hippocampus," Nature, Nature, vol. 424(6948), pages 552-556, July.
- Elad Schneidman & Michael J. Berry & Ronen Segev & William Bialek, 2006. "Weak pairwise correlations imply strongly correlated network states in a neural population," Nature, Nature, vol. 440(7087), pages 1007-1012, April.
- Ifije E. Ohiorhenuan & Ferenc Mechler & Keith P. Purpura & Anita M. Schmid & Qin Hu & Jonathan D. Victor, 2010. "Sparse coding and high-order correlations in fine-scale cortical networks," Nature, Nature, vol. 466(7306), pages 617-621, July.
- Mark Stopfer & Seetha Bhagavan & Brian H. Smith & Gilles Laurent, 1997. "Impaired odour discrimination on desynchronization of odour-encoding neural assemblies," Nature, Nature, vol. 390(6655), pages 70-74, November.
- Yasser Roudi & Sheila Nirenberg & Peter E Latham, 2009. "Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't," PLOS Computational Biology, Public Library of Science, vol. 5(5), pages 1-18, May.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Alok Maity & Roy Wollman, 2020. "Information transmission from NFkB signaling dynamics to gene expression," PLOS Computational Biology, Public Library of Science, vol. 16(8), pages 1-16, August.
- Urs Köster & Jascha Sohl-Dickstein & Charles M Gray & Bruno A Olshausen, 2014. "Modeling Higher-Order Correlations within Cortical Microcolumns," PLOS Computational Biology, Public Library of Science, vol. 10(7), pages 1-12, July.
- Gašper Tkačik & Olivier Marre & Dario Amodei & Elad Schneidman & William Bialek & Michael J Berry II, 2014. "Searching for Collective Behavior in a Large Network of Sensory Neurons," PLOS Computational Biology, Public Library of Science, vol. 10(1), pages 1-23, January.
- Porta Mana, PierGianLuca & Rostami, Vahid & Torre, Emiliano & Roudi, Yasser, 2018. "Maximum-entropy and representative samples of neuronal activity: a dilemma," OSF Preprints uz29n, Center for Open Science.
- Christian Donner & Klaus Obermayer & Hideaki Shimazaki, 2017. "Approximate Inference for Time-Varying Interactions and Macroscopic Dynamics of Neural Populations," PLOS Computational Biology, Public Library of Science, vol. 13(1), pages 1-27, January.
- Wouter Boomsma & Jesper Ferkinghoff-Borg & Kresten Lindorff-Larsen, 2014. "Combining Experiments and Simulations Using the Maximum Entropy Principle," PLOS Computational Biology, Public Library of Science, vol. 10(2), pages 1-9, February.
- Jason S Prentice & Olivier Marre & Mark L Ioffe & Adrianna R Loback & Gašper Tkačik & Michael J Berry II, 2016. "Error-Robust Modes of the Retinal Population Code," PLOS Computational Biology, Public Library of Science, vol. 12(11), pages 1-32, November.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Montangie, Lisandro & Montani, Fernando, 2015. "Quantifying higher-order correlations in a neuronal pool," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 421(C), pages 388-400.
- Hideaki Shimazaki & Shun-ichi Amari & Emery N Brown & Sonja Grün, 2012. "State-Space Analysis of Time-Varying Higher-Order Spike Correlation for Multiple Neural Spike Train Data," PLOS Computational Biology, Public Library of Science, vol. 8(3), pages 1-27, March.
- Montani, Fernando & Phoka, Elena & Portesi, Mariela & Schultz, Simon R., 2013. "Statistical modelling of higher-order correlations in pools of neural activity," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(14), pages 3066-3086.
- Seif Eldawlatly & Karim G Oweiss, 2011. "Millisecond-Timescale Local Network Coding in the Rat Primary Somatosensory Cortex," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-14, June.
- Cofré, Rodrigo & Cessac, Bruno, 2013. "Dynamics and spike trains statistics in conductance-based integrate-and-fire neural networks with chemical and electric synapses," Chaos, Solitons & Fractals, Elsevier, vol. 50(C), pages 13-31.
- Arno Onken & Valentin Dragoi & Klaus Obermayer, 2012. "A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts," PLOS Computational Biology, Public Library of Science, vol. 8(6), pages 1-12, June.
- Christian Donner & Klaus Obermayer & Hideaki Shimazaki, 2017. "Approximate Inference for Time-Varying Interactions and Macroscopic Dynamics of Neural Populations," PLOS Computational Biology, Public Library of Science, vol. 13(1), pages 1-27, January.
- Yasser Roudi & Sheila Nirenberg & Peter E Latham, 2009. "Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Can't," PLOS Computational Biology, Public Library of Science, vol. 5(5), pages 1-18, May.
- Jan Humplik & Gašper Tkačik, 2017. "Probabilistic models for neural populations that naturally capture global coupling and criticality," PLOS Computational Biology, Public Library of Science, vol. 13(9), pages 1-26, September.
- Urs Köster & Jascha Sohl-Dickstein & Charles M Gray & Bruno A Olshausen, 2014. "Modeling Higher-Order Correlations within Cortical Microcolumns," PLOS Computational Biology, Public Library of Science, vol. 10(7), pages 1-12, July.
- Porta Mana, PierGianLuca & Rostami, Vahid & Torre, Emiliano & Roudi, Yasser, 2018. "Maximum-entropy and representative samples of neuronal activity: a dilemma," OSF Preprints uz29n, Center for Open Science.
- Emili Balaguer-Ballester & Christopher C Lapish & Jeremy K Seamans & Daniel Durstewitz, 2011. "Attracting Dynamics of Frontal Cortex Ensembles during Memory-Guided Decision-Making," PLOS Computational Biology, Public Library of Science, vol. 7(5), pages 1-19, May.
- Dimitri Yatsenko & Krešimir Josić & Alexander S Ecker & Emmanouil Froudarakis & R James Cotton & Andreas S Tolias, 2015. "Improved Estimation and Interpretation of Correlations in Neural Circuits," PLOS Computational Biology, Public Library of Science, vol. 11(3), pages 1-28, March.
- Guillaume Viejo & Thomas Cortier & Adrien Peyrache, 2018. "Brain-state invariant thalamo-cortical coordination revealed by non-linear encoders," PLOS Computational Biology, Public Library of Science, vol. 14(3), pages 1-25, March.
- Montangie, Lisandro & Montani, Fernando, 2017. "Higher-order correlations in common input shapes the output spiking activity of a neural population," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 471(C), pages 845-861.
- Benjamin Dunn & Maria Mørreaunet & Yasser Roudi, 2015. "Correlations and Functional Connections in a Population of Grid Cells," PLOS Computational Biology, Public Library of Science, vol. 11(2), pages 1-21, February.
- Xi, Ning & Muneepeerakul, Rachata & Azaele, Sandro & Wang, Yougui, 2014. "Maximum entropy model for business cycle synchronization," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 413(C), pages 189-194.
- Gašper Tkačik & Olivier Marre & Dario Amodei & Elad Schneidman & William Bialek & Michael J Berry II, 2014. "Searching for Collective Behavior in a Large Network of Sensory Neurons," PLOS Computational Biology, Public Library of Science, vol. 10(1), pages 1-23, January.
- Shohei Hidaka & Masafumi Oizumi, 2018. "Fast and exact search for the partition with minimal information loss," PLOS ONE, Public Library of Science, vol. 13(9), pages 1-14, September.
- Stojan Jovanović & Stefan Rotter, 2016. "Interplay between Graph Topology and Correlations of Third Order in Spiking Neuronal Networks," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-28, June.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1002922. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.