IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-47677-8.html
   My bibliography  Save this article

Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters

Author

Listed:
  • Anmin Jiang

    (The University of Queensland)

  • Kye Kudo

    (The University of Queensland)

  • Rachel S. Gormal

    (The University of Queensland)

  • Sevannah Ellis

    (The University of Queensland)

  • Sikao Guo

    (Johns Hopkins University)

  • Tristan P. Wallis

    (The University of Queensland)

  • Shanley F. Longfield

    (The University of Queensland)

  • Phillip J. Robinson

    (The University of Sydney)

  • Margaret E. Johnson

    (Johns Hopkins University)

  • Merja Joensuu

    (The University of Queensland
    The University of Queensland)

  • Frédéric A. Meunier

    (The University of Queensland
    The University of Queensland)

Abstract

Endocytosis requires a coordinated framework of molecular interactions that ultimately lead to the fission of nascent endocytic structures. How cytosolic proteins such as dynamin concentrate at discrete sites that are sparsely distributed across the plasma membrane remains poorly understood. Two dynamin-1 major splice variants differ by the length of their C-terminal proline-rich region (short-tail and long-tail). Using sptPALM in PC12 cells, neurons and MEF cells, we demonstrate that short-tail dynamin-1 isoforms ab and bb display an activity-dependent recruitment to the membrane, promptly followed by their concentration into nanoclusters. These nanoclusters are sensitive to both Calcineurin and dynamin GTPase inhibitors, and are larger, denser, and more numerous than that of long-tail isoform aa. Spatiotemporal modelling confirms that dynamin-1 isoforms perform distinct search patterns and undergo dimensional reduction to generate endocytic nanoclusters, with short-tail isoforms more robustly exploiting lateral trapping in the generation of nanoclusters compared to the long-tail isoform.

Suggested Citation

  • Anmin Jiang & Kye Kudo & Rachel S. Gormal & Sevannah Ellis & Sikao Guo & Tristan P. Wallis & Shanley F. Longfield & Phillip J. Robinson & Margaret E. Johnson & Merja Joensuu & Frédéric A. Meunier, 2024. "Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47677-8
    DOI: 10.1038/s41467-024-47677-8
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-47677-8
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-47677-8?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Noguchi, Kimihiro & Gel, Yulia R. & Brunner, Edgar & Konietschke, Frank, 2012. "nparLD: An R Software Package for the Nonparametric Analysis of Longitudinal Data in Factorial Experiments," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 50(i12).
    2. Peter J. Wen & Shona L. Osborne & Mark Zanin & Pei Ching Low & Hai-Tao A. Wang & Simone M. Schoenwaelder & Shaun P. Jackson & Roland Wedlich-Söldner & Bart Vanhaesebroeck & Damien J. Keating & Frédéri, 2011. "Phosphatidylinositol(4,5)bisphosphate coordinates actin-mediated mobilization and translocation of secretory vesicles to the plasma membrane of chromaffin cells," Nature Communications, Nature, vol. 2(1), pages 1-11, September.
    3. Adekunle T. Bademosi & Elsa Lauwers & Pranesh Padmanabhan & Lorenzo Odierna & Ye Jin Chai & Andreas Papadopulos & Geoffrey J. Goodhill & Patrik Verstreken & Bruno van Swinderen & Frédéric A. Meunier, 2016. "In vivo single-molecule imaging of syntaxin1A reveals polyphosphoinositide- and activity-dependent trapping in presynaptic nanoclusters," Nature Communications, Nature, vol. 7(1), pages 1-17, December.
    4. Bruno Marks & Michael H. B. Stowell & Yvonne Vallis & Ian G. Mills & Adele Gibson & Colin R. Hopkins & Harvey T. McMahon, 2001. "GTPase activity of dynamin and resulting conformation change are essential for endocytosis," Nature, Nature, vol. 410(6825), pages 231-235, March.
    5. Andreas Papadopulos & Guillermo A. Gomez & Sally Martin & Jade Jackson & Rachel S. Gormal & Damien J. Keating & Alpha S. Yap & Frederic A. Meunier, 2015. "Activity-driven relaxation of the cortical actomyosin II network synchronizes Munc18-1-dependent neurosecretory vesicle docking," Nature Communications, Nature, vol. 6(1), pages 1-11, May.
    6. Tristan P. Wallis & Anmin Jiang & Kyle Young & Huiyi Hou & Kye Kudo & Alex J. McCann & Nela Durisic & Merja Joensuu & Dietmar Oelz & Hien Nguyen & Rachel S. Gormal & Frédéric A. Meunier, 2023. "Super-resolved trajectory-derived nanoclustering analysis using spatiotemporal indexing," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    7. Eva M. Schmid & Harvey T. McMahon, 2007. "Integrating molecular and network biology to decode endocytosis," Nature, Nature, vol. 448(7156), pages 883-888, August.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Johan Verbeeck & Martin Geroldinger & Konstantin Thiel & Andrew Craig Hooker & Sebastian Ueckert & Mats Karlsson & Arne Cornelius Bathke & Johann Wolfgang Bauer & Geert Molenberghs & Georg Zimmermann, 2023. "How to analyze continuous and discrete repeated measures in small‐sample cross‐over trials?," Biometrics, The International Biometric Society, vol. 79(4), pages 3998-4011, December.
    2. Shanley F. Longfield & Rachel S. Gormal & Matis Feller & Pierre Parutto & Jürgen Reingruber & Tristan P. Wallis & Merja Joensuu & George J. Augustine & Ramón Martínez-Mármol & David Holcman & Frédéric, 2024. "Synapsin 2a tetramerisation selectively controls the presynaptic nanoscale organisation of reserve synaptic vesicles," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    3. Hasler Mario, 2013. "Multiple Contrasts for Repeated Measures," The International Journal of Biostatistics, De Gruyter, vol. 9(1), pages 1-13, July.
    4. Burchett, Woodrow W. & Ellis, Amanda R. & Harrar, Solomon W. & Bathke, Arne C., 2017. "Nonparametric Inference for Multivariate Data: The R Package npmv," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 76(i04).
    5. David Paul & Omer Stern & Yvonne Vallis & Jatinder Dhillon & Andrew Buchanan & Harvey McMahon, 2023. "Cell surface protein aggregation triggers endocytosis to maintain plasma membrane proteostasis," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    6. Wyłupek, Grzegorz, 2023. "A nonparametric test for paired data," Journal of Multivariate Analysis, Elsevier, vol. 198(C).
    7. Dinah Loerke & Marcel Mettlen & Defne Yarar & Khuloud Jaqaman & Henry Jaqaman & Gaudenz Danuser & Sandra L Schmid, 2009. "Cargo and Dynamin Regulate Clathrin-Coated Pit Maturation," PLOS Biology, Public Library of Science, vol. 7(3), pages 1-12, March.
    8. Simon Haslinger & Daniela Huber & David Morawetz & Cornelia Blank & Johanna Prossegger & Tobias Dünnwald & Arnold Koller & Christian Fink & Arnulf Hartl & Wolfgang Schobersberger, 2019. "Feasibility of Ski Mountaineering for Patients Following a Total Knee Arthroplasty: A Descriptive Field Study," IJERPH, MDPI, vol. 16(9), pages 1-19, May.
    9. Violette Chiara & Felipe Ramon Portugal & Raphael Jeanson, 2019. "Social intolerance is a consequence, not a cause, of dispersal in spiders," PLOS Biology, Public Library of Science, vol. 17(7), pages 1-27, July.
    10. Umlauft, Maria & Placzek, Marius & Konietschke, Frank & Pauly, Markus, 2019. "Wild bootstrapping rank-based procedures: Multiple testing in nonparametric factorial repeated measures designs," Journal of Multivariate Analysis, Elsevier, vol. 171(C), pages 176-192.
    11. Ana Mª Pérez Pico & Ester Mingorance Álvarez & Rodrigo Martínez Quintana & Raquel Mayordomo Acevedo, 2019. "Importance of Sock Type in the Development of Foot Lesions on Low-Difficulty, Short Hikes," IJERPH, MDPI, vol. 16(10), pages 1-13, May.
    12. Elaine B Schenk & Frederic A Meunier & Dietmar B Oelz, 2022. "Spatial redistribution of neurosecretory vesicles upon stimulation accelerates their directed transport to the plasma membrane," PLOS ONE, Public Library of Science, vol. 17(3), pages 1-17, March.
    13. Wei-Siang Liau & Qiongyi Zhao & Adekunle Bademosi & Rachel S. Gormal & Hao Gong & Paul R. Marshall & Ambika Periyakaruppiah & Sachithrani U. Madugalle & Esmi L. Zajaczkowski & Laura J. Leighton & Haob, 2023. "Fear extinction is regulated by the activity of long noncoding RNAs at the synapse," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    14. Katherine Bonnycastle & Katharine L. Dobson & Eva-Maria Blumrich & Akshada Gajbhiye & Elizabeth C. Davenport & Marie Pronot & Moritz Steinruecke & Matthias Trost & Alfredo Gonzalez-Sulser & Michael A., 2023. "Reversal of cell, circuit and seizure phenotypes in a mouse model of DNM1 epileptic encephalopathy," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    15. Ted Maldonado & James R M Goen & Michael J Imburgio & Sydney M Eakin & Jessica A Bernard, 2019. "Single session high definition transcranial direct current stimulation to the cerebellum does not impact higher cognitive function," PLOS ONE, Public Library of Science, vol. 14(10), pages 1-19, October.
    16. Friedrich, Sarah & Konietschke, Frank & Pauly, Markus, 2017. "A wild bootstrap approach for nonparametric repeated measurements," Computational Statistics & Data Analysis, Elsevier, vol. 113(C), pages 38-52.
    17. Crawford, Michael & Rutkowski, David & Rutkowski, Leslie, 2023. "Improving reading abilities, attitudes and practices: A home-based intervention of supplementary texts for young readers in Cambodia," International Journal of Educational Development, Elsevier, vol. 103(C).
    18. Francisco Barbosa Escobar & Carlos Velasco & Kosuke Motoki & Derek Victor Byrne & Qian Janice Wang, 2021. "The temperature of emotions," PLOS ONE, Public Library of Science, vol. 16(6), pages 1-28, June.
    19. Johanna Prossegger & Daniela Huber & Carina Grafetstätter & Christina Pichler & Herbert Braunschmid & Renate Weisböck-Erdheim & Arnulf Hartl, 2019. "Winter Exercise Reduces Allergic Airway Inflammation: A Randomized Controlled Study," IJERPH, MDPI, vol. 16(11), pages 1-15, June.
    20. Steen W. B. Bender & Marcus W. Dreisler & Min Zhang & Jacob Kæstel-Hansen & Nikos S. Hatzakis, 2024. "SEMORE: SEgmentation and MORphological fingErprinting by machine learning automates super-resolution data analysis," Nature Communications, Nature, vol. 15(1), pages 1-13, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47677-8. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.