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Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments

Author

Listed:
  • Meishun Yu

    (Ministry of Natural Resources)

  • Menghui Zhang

    (Ministry of Natural Resources)

  • Runying Zeng

    (Ministry of Natural Resources)

  • Ruolin Cheng

    (Ministry of Natural Resources)

  • Rui Zhang

    (Shenzhen University)

  • Yanping Hou

    (Ministry of Natural Resources)

  • Fangfang Kuang

    (Ministry of Natural Resources)

  • Xuejin Feng

    (Ministry of Natural Resources)

  • Xiyang Dong

    (Ministry of Natural Resources)

  • Yinfang Li

    (Ministry of Natural Resources)

  • Zongze Shao

    (Ministry of Natural Resources)

  • Min Jin

    (Ministry of Natural Resources)

Abstract

Seamounts are globally distributed across the oceans and form one of the major oceanic biomes. Here, we utilized combined analyses of bulk metagenome and virome to study viral communities in seamount sediments in the western Pacific Ocean. Phylogenetic analyses and the protein-sharing network demonstrate extensive diversity and previously unknown viral clades. Inference of virus-host linkages uncovers extensive interactions between viruses and dominant prokaryote lineages, and suggests that viruses play significant roles in carbon, sulfur, and nitrogen cycling by compensating or augmenting host metabolisms. Moreover, temperate viruses are predicted to be prevalent in seamount sediments, which tend to carry auxiliary metabolic genes for host survivability. Intriguingly, the geographical features of seamounts likely compromise the connectivity of viral communities and thus contribute to the high divergence of viral genetic spaces and populations across seamounts. Altogether, these findings provides knowledge essential for understanding the biogeography and ecological roles of viruses in globally widespread seamounts.

Suggested Citation

  • Meishun Yu & Menghui Zhang & Runying Zeng & Ruolin Cheng & Rui Zhang & Yanping Hou & Fangfang Kuang & Xuejin Feng & Xiyang Dong & Yinfang Li & Zongze Shao & Min Jin, 2024. "Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47600-1
    DOI: 10.1038/s41467-024-47600-1
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    References listed on IDEAS

    as
    1. Bertrand Richer de Forges & J. Anthony Koslow & G. C. B. Poore, 2000. "Diversity and endemism of the benthic seamount fauna in the southwest Pacific," Nature, Nature, vol. 405(6789), pages 944-947, June.
    2. Shibu Yooseph & Granger Sutton & Douglas B Rusch & Aaron L Halpern & Shannon J Williamson & Karin Remington & Jonathan A Eisen & Karla B Heidelberg & Gerard Manning & Weizhong Li & Lukasz Jaroszewski , 2007. "The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families," PLOS Biology, Public Library of Science, vol. 5(3), pages 1-35, March.
    3. Simon Roux & Jennifer R. Brum & Bas E. Dutilh & Shinichi Sunagawa & Melissa B. Duhaime & Alexander Loy & Bonnie T. Poulos & Natalie Solonenko & Elena Lara & Julie Poulain & Stéphane Pesant & Stefanie , 2016. "Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses," Nature, Nature, vol. 537(7622), pages 689-693, September.
    4. Kristopher Kieft & Zhichao Zhou & Rika E. Anderson & Alison Buchan & Barbara J. Campbell & Steven J. Hallam & Matthias Hess & Matthew B. Sullivan & David A. Walsh & Simon Roux & Karthik Anantharaman, 2021. "Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
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