IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-51344-3.html
   My bibliography  Save this article

Viral plasticity facilitates host diversity in challenging environments

Author

Listed:
  • Juan A. Bonachela

    (Rutgers University)

Abstract

The antagonistic coevolution of microbes and viruses influences fundamentally the diversity of microbial communities. Information on how environmental variables interact with emergent defense-counterdefense strategies and community composition is, however, still scarce. Following biological intuition, diversity should increase with improved growth conditions, which offset evolutionary costs; however, laboratory and regional data suggest that microbial diversity decreases in nutrient-rich conditions. Moreover, global oceanic data show that microbial and viral diversity decline for high latitudes, although the underlying mechanisms are unknown. This article addresses these gaps by introducing an eco-evolutionary model for bacteria-virus antagonistic coevolution. The theory presented here harmonizes the observations above and identifies negative density dependence and viral plasticity (dependence of virus performance on host physiological state) as key drivers: environmental conditions selecting for slow host growth also limit viral performance, facilitating the survival of a diverse host community; host diversity, in turn, enables viral portfolio effects and bet-hedging strategies that sustain viral diversity. From marine microbes to phage therapy against antibiotic-resistant bacteria or cancer cells, the ubiquity of antagonistic coevolution highlights the need to consider eco-evolutionary interactions across a gradient of growth conditions.

Suggested Citation

  • Juan A. Bonachela, 2024. "Viral plasticity facilitates host diversity in challenging environments," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-51344-3
    DOI: 10.1038/s41467-024-51344-3
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-51344-3
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-51344-3?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Jed A. Fuhrman, 1999. "Marine viruses and their biogeochemical and ecological effects," Nature, Nature, vol. 399(6736), pages 541-548, June.
    2. Sarit Avrani & Omri Wurtzel & Itai Sharon & Rotem Sorek & Debbie Lindell, 2011. "Genomic island variability facilitates Prochlorococcus–virus coexistence," Nature, Nature, vol. 474(7353), pages 604-608, June.
    3. Simon Roux & Jennifer R. Brum & Bas E. Dutilh & Shinichi Sunagawa & Melissa B. Duhaime & Alexander Loy & Bonnie T. Poulos & Natalie Solonenko & Elena Lara & Julie Poulain & Stéphane Pesant & Stefanie , 2016. "Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses," Nature, Nature, vol. 537(7622), pages 689-693, September.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Keller, David P. & Hood, Raleigh R., 2011. "Modeling the seasonal autochthonous sources of dissolved organic carbon and nitrogen in the upper Chesapeake Bay," Ecological Modelling, Elsevier, vol. 222(5), pages 1139-1162.
    2. Zihao Zhao & Chie Amano & Thomas Reinthaler & Federico Baltar & Mónica V. Orellana & Gerhard J. Herndl, 2024. "Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    3. Yuanmin Sun & Kunxian Tang & Hui Song & Degang Jiang & Shan Chen & Wulin Tu & Luchun Cai & Haiping Huang & Fei Zhang, 2022. "The Effect of Domestic Sewage Treatment on Islands Using Ecological Treatment Processes: A Case Study of Haimen Island, Fujian Province," IJERPH, MDPI, vol. 19(23), pages 1-12, November.
    4. Meishun Yu & Menghui Zhang & Runying Zeng & Ruolin Cheng & Rui Zhang & Yanping Hou & Fangfang Kuang & Xuejin Feng & Xiyang Dong & Yinfang Li & Zongze Shao & Min Jin, 2024. "Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    5. Yang Huang & Hui Sun & Shuzhen Wei & Lanlan Cai & Liqin Liu & Yanan Jiang & Jiabao Xin & Zhenqin Chen & Yuqiong Que & Zhibo Kong & Tingting Li & Hai Yu & Jun Zhang & Ying Gu & Qingbing Zheng & Shaowei, 2023. "Structure and proposed DNA delivery mechanism of a marine roseophage," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    6. Yuxuan Du & Jed A. Fuhrman & Fengzhu Sun, 2023. "ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    7. Rafael Gonzalez-Serrano & Riccardo Rosselli & Juan J. Roda-Garcia & Ana-Belen Martin-Cuadrado & Francisco Rodriguez-Valera & Matthew Dunne, 2023. "Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    8. Zongzhi Wu & Tang Liu & Qian Chen & Tianyi Chen & Jinyun Hu & Liyu Sun & Bingxue Wang & Wenpeng Li & Jinren Ni, 2024. "Unveiling the unknown viral world in groundwater," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    9. Krishna, Shubham & Peterson, Victoria & Listmann, Luisa & Hinners, Jana, 2024. "Interactive effects of viral lysis and warming in a coastal ocean identified from an idealized ecosystem model," Ecological Modelling, Elsevier, vol. 487(C).
    10. Zhi-Ping Zhong & Jingjie Du & Stephan Köstlbacher & Petra Pjevac & Sandi Orlić & Matthew B. Sullivan, 2024. "Viral potential to modulate microbial methane metabolism varies by habitat," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    11. Ming Yan & Akbar Adjie Pratama & Sripoorna Somasundaram & Zongjun Li & Yu Jiang & Matthew B. Sullivan & Zhongtang Yu, 2023. "Interrogating the viral dark matter of the rumen ecosystem with a global virome database," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    12. Pauline C. Göller & Tabea Elsener & Dominic Lorgé & Natasa Radulovic & Viona Bernardi & Annika Naumann & Nesrine Amri & Ekaterina Khatchatourova & Felipe Hernandes Coutinho & Martin J. Loessner & Elen, 2021. "Multi-species host range of staphylococcal phages isolated from wastewater," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
    13. Javier Lopez-Simon & Marina Vila-Nistal & Aleksandra Rosenova & Daniele Corte & Federico Baltar & Manuel Martinez-Garcia, 2023. "Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    14. Xiaomei Feng & Yuan Miao & Shulin Sun & Lei Wang, 2022. "Dynamic Behaviors of a Stochastic Eco-Epidemiological Model for Viral Infection in the Toxin-Producing Phytoplankton and Zooplankton System," Mathematics, MDPI, vol. 10(8), pages 1-18, April.
    15. Sun, Zhe & Zhou, Zhi, 2019. "Nature-inspired virus-assisted algal cell disruption for cost-effective biofuel production," Applied Energy, Elsevier, vol. 251(C), pages 1-1.
    16. Stephen J. Beckett & David Demory & Ashley R. Coenen & John R. Casey & Mathilde Dugenne & Christopher L. Follett & Paige Connell & Michael C. G. Carlson & Sarah K. Hu & Samuel T. Wilson & Daniel Murat, 2024. "Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    17. Alexa M. Nicolas & Ella T. Sieradzki & Jennifer Pett-Ridge & Jillian F. Banfield & Michiko E. Taga & Mary K. Firestone & Steven J. Blazewicz, 2023. "A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    18. Einat Shaer Tamar & Roy Kishony, 2022. "Multistep diversification in spatiotemporal bacterial-phage coevolution," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    19. Liyun An & Xinwu Liu & Jianwei Wang & Jinbo Xu & Xiaoli Chen & Xiaonan Liu & Bingxin Hu & Yong Nie & Xiao-Lei Wu, 2024. "Global diversity and ecological functions of viruses inhabiting oil reservoirs," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    20. Yantao Liang & Li Li & Tingwei Luo & Yao Zhang & Rui Zhang & Nianzhi Jiao, 2014. "Horizontal and Vertical Distribution of Marine Virioplankton: A Basin Scale Investigation Based on a Global Cruise," PLOS ONE, Public Library of Science, vol. 9(11), pages 1-11, November.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-51344-3. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.