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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Author

Listed:
  • Simon Roux

    (The Ohio State University)

  • Jennifer R. Brum

    (The Ohio State University)

  • Bas E. Dutilh

    (Theoretical Biology and Bioinformatics, Utrecht University
    Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre
    Federal University of Rio de Janeiro)

  • Shinichi Sunagawa

    (Structural and Computational Biology, European Molecular Biology Laboratory
    †Present address: Department of Biology, Institute of Microbiology, ETH Zurich, 8093 Zurich, Switzerland.)

  • Melissa B. Duhaime

    (University of Michigan)

  • Alexander Loy

    (Research Network Chemistry Meets Microbiology, University of Vienna
    Austrian Polar Research Institute)

  • Bonnie T. Poulos

    (University of Arizona)

  • Natalie Solonenko

    (The Ohio State University)

  • Elena Lara

    (Institut de Ciències del Mar (ICM), CSIC
    Institute of Marine Sciences (CNR-ISMAR), National Research Council)

  • Julie Poulain

    (CEA - Institut de Génomique, GENOSCOPE)

  • Stéphane Pesant

    (PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen
    MARUM, Bremen University)

  • Stefanie Kandels-Lewis

    (Structural and Computational Biology, European Molecular Biology Laboratory
    Directors’ Research, European Molecular Biology Laboratory)

  • Céline Dimier

    (CNRS, UMR 7144, EPEP, Station Biologique de Roscoff
    Sorbonne Universités, UPMC Université Paris 06, UMR 7144, Station Biologique de Roscoff
    Institut de Biologie de l’École Normale Supérieure, École Normale Supérieure, Paris Sciences et Lettres Research University, CNRS UMR 8197)

  • Marc Picheral

    (CNRS, UMR 7093, Laboratoire d'océanographie de Villefranche, Observatoire Océanologique
    Sorbonne Universités, UPMC Université Paris 06, UMR 7093, Observatoire Océanologique)

  • Sarah Searson

    (CNRS, UMR 7093, Laboratoire d'océanographie de Villefranche, Observatoire Océanologique
    Sorbonne Universités, UPMC Université Paris 06, UMR 7093, Observatoire Océanologique)

  • Corinne Cruaud

    (CEA - Institut de Génomique, GENOSCOPE)

  • Adriana Alberti

    (CEA - Institut de Génomique, GENOSCOPE)

  • Carlos M. Duarte

    (Mediterranean Institute of Advanced Studies, CSIC-UiB
    King Abdullah University of Science and Technology, Red Sea Research Center)

  • Josep M. Gasol

    (Institut de Ciències del Mar (ICM), CSIC)

  • Dolors Vaqué

    (Institut de Ciències del Mar (ICM), CSIC)

  • Peer Bork

    (Structural and Computational Biology, European Molecular Biology Laboratory
    Max-Delbrück-Centre for Molecular Medicine)

  • Silvia G. Acinas

    (Institut de Ciències del Mar (ICM), CSIC)

  • Patrick Wincker

    (CEA - Institut de Génomique, GENOSCOPE
    CNRS, UMR 8030
    Université d’Evry, UMR 8030)

  • Matthew B. Sullivan

    (The Ohio State University
    Environmental and Geodetic Engineering, The Ohio State University)

Abstract

The assembly and analysis of complete genomes and large genomic fragments have tripled the number of known ocean viruses and uncovered the potentially important roles they play in nitrogen and sulfur cycling.

Suggested Citation

  • Simon Roux & Jennifer R. Brum & Bas E. Dutilh & Shinichi Sunagawa & Melissa B. Duhaime & Alexander Loy & Bonnie T. Poulos & Natalie Solonenko & Elena Lara & Julie Poulain & Stéphane Pesant & Stefanie , 2016. "Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses," Nature, Nature, vol. 537(7622), pages 689-693, September.
    • Handle: RePEc:nat:nature:v:537:y:2016:i:7622:d:10.1038_nature19366
    DOI: 10.1038/nature19366
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    Citations

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    Cited by:

    1. Juan A. Bonachela, 2024. "Viral plasticity facilitates host diversity in challenging environments," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    2. Javier Lopez-Simon & Marina Vila-Nistal & Aleksandra Rosenova & Daniele Corte & Federico Baltar & Manuel Martinez-Garcia, 2023. "Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    3. Gonçalo J. Piedade & Max E. Schön & Cédric Lood & Mikhail V. Fofanov & Ella M. Wesdorp & Tristan E. G. Biggs & Lingyi Wu & Henk Bolhuis & Matthias G. Fischer & Natalya Yutin & Bas E. Dutilh & Corina P, 2024. "Seasonal dynamics and diversity of Antarctic marine viruses reveal a novel viral seascape," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    4. Yi Yi & Shunzhang Liu & Yali Hao & Qingyang Sun & Xinjuan Lei & Yecheng Wang & Jiahua Wang & Mujie Zhang & Shan Tang & Qingxue Tang & Yue Zhang & Xipeng Liu & Yinzhao Wang & Xiang Xiao & Huahua Jian, 2023. "A systematic analysis of marine lysogens and proviruses," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    5. Shaoming Gao & David Paez-Espino & Jintian Li & Hongxia Ai & Jieliang Liang & Zhenhao Luo & Jin Zheng & Hao Chen & Wensheng Shu & Linan Huang, 2022. "Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    6. Meishun Yu & Menghui Zhang & Runying Zeng & Ruolin Cheng & Rui Zhang & Yanping Hou & Fangfang Kuang & Xuejin Feng & Xiyang Dong & Yinfang Li & Zongze Shao & Min Jin, 2024. "Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    7. Mengzhi Ji & Jiayin Zhou & Yan Li & Kai Ma & Wen Song & Yueyue Li & Jizhong Zhou & Qichao Tu, 2024. "Biodiversity of mudflat intertidal viromes along the Chinese coasts," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    8. Zihao Zhao & Chie Amano & Thomas Reinthaler & Federico Baltar & Mónica V. Orellana & Gerhard J. Herndl, 2024. "Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    9. Zhi-Ping Zhong & Jingjie Du & Stephan Köstlbacher & Petra Pjevac & Sandi Orlić & Matthew B. Sullivan, 2024. "Viral potential to modulate microbial methane metabolism varies by habitat," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    10. Rafael Gonzalez-Serrano & Riccardo Rosselli & Juan J. Roda-Garcia & Ana-Belen Martin-Cuadrado & Francisco Rodriguez-Valera & Matthew Dunne, 2023. "Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    11. Ming Yan & Akbar Adjie Pratama & Sripoorna Somasundaram & Zongjun Li & Yu Jiang & Matthew B. Sullivan & Zhongtang Yu, 2023. "Interrogating the viral dark matter of the rumen ecosystem with a global virome database," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    12. Zongzhi Wu & Tang Liu & Qian Chen & Tianyi Chen & Jinyun Hu & Liyu Sun & Bingxue Wang & Wenpeng Li & Jinren Ni, 2024. "Unveiling the unknown viral world in groundwater," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    13. Liyun An & Xinwu Liu & Jianwei Wang & Jinbo Xu & Xiaoli Chen & Xiaonan Liu & Bingxin Hu & Yong Nie & Xiao-Lei Wu, 2024. "Global diversity and ecological functions of viruses inhabiting oil reservoirs," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    14. Pauline C. Göller & Tabea Elsener & Dominic Lorgé & Natasa Radulovic & Viona Bernardi & Annika Naumann & Nesrine Amri & Ekaterina Khatchatourova & Felipe Hernandes Coutinho & Martin J. Loessner & Elen, 2021. "Multi-species host range of staphylococcal phages isolated from wastewater," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
    15. Alexa M. Nicolas & Ella T. Sieradzki & Jennifer Pett-Ridge & Jillian F. Banfield & Michiko E. Taga & Mary K. Firestone & Steven J. Blazewicz, 2023. "A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil," Nature Communications, Nature, vol. 14(1), pages 1-16, December.

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