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Engineering an artificial catch bond using mechanical anisotropy

Author

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  • Zhaowei Liu

    (University of Basel
    ETH Zurich
    Delft University of Technology)

  • Haipei Liu

    (University of Basel
    ETH Zurich)

  • Andrés M. Vera

    (Ludwig-Maximilians-Universität München)

  • Byeongseon Yang

    (University of Basel
    ETH Zurich
    Botnar Research Centre for Child Health
    National Center for Competence in Research (NCCR) Molecular Systems Engineering)

  • Philip Tinnefeld

    (Ludwig-Maximilians-Universität München)

  • Michael A. Nash

    (University of Basel
    ETH Zurich
    Botnar Research Centre for Child Health
    National Center for Competence in Research (NCCR) Molecular Systems Engineering)

Abstract

Catch bonds are a rare class of protein-protein interactions where the bond lifetime increases under an external pulling force. Here, we report how modification of anchor geometry generates catch bonding behavior for the mechanostable Dockerin G:Cohesin E (DocG:CohE) adhesion complex found on human gut bacteria. Using AFM single-molecule force spectroscopy in combination with bioorthogonal click chemistry, we mechanically dissociate the complex using five precisely controlled anchor geometries. When tension is applied between residue #13 on CohE and the N-terminus of DocG, the complex behaves as a two-state catch bond, while in all other tested pulling geometries, including the native configuration, it behaves as a slip bond. We use a kinetic Monte Carlo model with experimentally derived parameters to simulate rupture force and lifetime distributions, achieving strong agreement with experiments. Single-molecule FRET measurements further demonstrate that the complex does not exhibit dual binding mode behavior at equilibrium but unbinds along multiple pathways under force. Together, these results show how mechanical anisotropy and anchor point selection can be used to engineer artificial catch bonds.

Suggested Citation

  • Zhaowei Liu & Haipei Liu & Andrés M. Vera & Byeongseon Yang & Philip Tinnefeld & Michael A. Nash, 2024. "Engineering an artificial catch bond using mechanical anisotropy," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-46858-9
    DOI: 10.1038/s41467-024-46858-9
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    References listed on IDEAS

    as
    1. Bryan T. Marshall & Mian Long & James W. Piper & Tadayuki Yago & Rodger P. McEver & Cheng Zhu, 2003. "Direct observation of catch bonds involving cell-adhesion molecules," Nature, Nature, vol. 423(6936), pages 190-193, May.
    2. Kristine Manibog & Hui Li & Sabyasachi Rakshit & Sanjeevi Sivasankar, 2014. "Resolving the molecular mechanism of cadherin catch bond formation," Nature Communications, Nature, vol. 5(1), pages 1-11, September.
    3. Hongxia Fu & Yan Jiang & Darren Yang & Friedrich Scheiflinger & Wesley P. Wong & Timothy A. Springer, 2017. "Flow-induced elongation of von Willebrand factor precedes tension-dependent activation," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
    4. Maximilian M. Sauer & Roman P. Jakob & Jonathan Eras & Sefer Baday & Deniz Eriş & Giulio Navarra & Simon Bernèche & Beat Ernst & Timm Maier & Rudi Glockshuber, 2016. "Catch-bond mechanism of the bacterial adhesin FimH," Nature Communications, Nature, vol. 7(1), pages 1-13, April.
    5. Zhaowei Liu & Haipei Liu & Andrés M. Vera & Rafael C. Bernardi & Philip Tinnefeld & Michael A. Nash, 2020. "High force catch bond mechanism of bacterial adhesion in the human gut," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
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