Eco-evolutionary dynamics of gut phageome in wild gibbons (Hoolock tianxing) with seasonal diet variations
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-024-45663-8
Download full text from publisher
References listed on IDEAS
- Sheetal R. Modi & Henry H. Lee & Catherine S. Spina & James J. Collins, 2013. "Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome," Nature, Nature, vol. 499(7457), pages 219-222, July.
- Florian Tesson & Alexandre Hervé & Ernest Mordret & Marie Touchon & Camille d’Humières & Jean Cury & Aude Bernheim, 2022. "Systematic and quantitative view of the antiviral arsenal of prokaryotes," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
- Nicholas D. Youngblut & Georg H. Reischer & William Walters & Nathalie Schuster & Chris Walzer & Gabrielle Stalder & Ruth E. Ley & Andreas H. Farnleitner, 2019. "Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
- Natalya Yutin & Sean Benler & Sergei A. Shmakov & Yuri I. Wolf & Igor Tolstoy & Mike Rayko & Dmitry Antipov & Pavel A. Pevzner & Eugene V. Koonin, 2021. "Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
- Justin L. Sonnenburg & Fredrik Bäckhed, 2016. "Diet–microbiota interactions as moderators of human metabolism," Nature, Nature, vol. 535(7610), pages 56-64, July.
- Steve Paterson & Tom Vogwill & Angus Buckling & Rebecca Benmayor & Andrew J. Spiers & Nicholas R. Thomson & Mike Quail & Frances Smith & Danielle Walker & Ben Libberton & Andrew Fenton & Neil Hall & M, 2010. "Antagonistic coevolution accelerates molecular evolution," Nature, Nature, vol. 464(7286), pages 275-278, March.
- Beverly Y. Mok & Marcos H. de Moraes & Jun Zeng & Dustin E. Bosch & Anna V. Kotrys & Aditya Raguram & FoSheng Hsu & Matthew C. Radey & S. Brook Peterson & Vamsi K. Mootha & Joseph D. Mougous & David R, 2020. "A bacterial cytidine deaminase toxin enables CRISPR-free mitochondrial base editing," Nature, Nature, vol. 583(7817), pages 631-637, July.
- Suguru Nishijima & Naoyoshi Nagata & Yuya Kiguchi & Yasushi Kojima & Tohru Miyoshi-Akiyama & Moto Kimura & Mitsuru Ohsugi & Kohjiro Ueki & Shinichi Oka & Masashi Mizokami & Takao Itoi & Takashi Kawai , 2022. "Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Alejandro Reyes & Matthew Haynes & Nicole Hanson & Florent E. Angly & Andrew C. Heath & Forest Rohwer & Jeffrey I. Gordon, 2010. "Viruses in the faecal microbiota of monozygotic twins and their mothers," Nature, Nature, vol. 466(7304), pages 334-338, July.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Samantha L. Peters & Adair L. Borges & Richard J. Giannone & Michael J. Morowitz & Jillian F. Banfield & Robert L. Hettich, 2022. "Experimental validation that human microbiome phages use alternative genetic coding," Nature Communications, Nature, vol. 13(1), pages 1-7, December.
- Emily Zhang & Monica E. Neugebauer & Nicholas A. Krasnow & David R. Liu, 2024. "Phage-assisted evolution of highly active cytosine base editors with enhanced selectivity and minimal sequence context preference," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Suzanne Humphrey & Álvaro San Millán & Macarena Toll-Riera & John Connolly & Alejandra Flor-Duro & John Chen & Carles Ubeda & R. Craig MacLean & José R. Penadés, 2021. "Staphylococcal phages and pathogenicity islands drive plasmid evolution," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
- Danielle Miller & Adi Stern & David Burstein, 2022. "Deciphering microbial gene function using natural language processing," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Patrick Munk & Christian Brinch & Frederik Duus Møller & Thomas N. Petersen & Rene S. Hendriksen & Anne Mette Seyfarth & Jette S. Kjeldgaard & Christina Aaby Svendsen & Bram Bunnik & Fanny Berglund & , 2022. "Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Angelina Beavogui & Auriane Lacroix & Nicolas Wiart & Julie Poulain & Tom O. Delmont & Lucas Paoli & Patrick Wincker & Pedro H. Oliveira, 2024. "The defensome of complex bacterial communities," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Rohan Maddamsetti & Yi Yao & Teng Wang & Junheng Gao & Vincent T. Huang & Grayson S. Hamrick & Hye-In Son & Lingchong You, 2024. "Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Friedrich Fauser & Bhakti N. Kadam & Sebastian Arangundy-Franklin & Jessica E. Davis & Vishvesha Vaidya & Nicola J. Schmidt & Garrett Lew & Danny F. Xia & Rakshaa Mureli & Colman Ng & Yuanyue Zhou & N, 2024. "Compact zinc finger architecture utilizing toxin-derived cytidine deaminases for highly efficient base editing in human cells," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Jan D. Brüwer & Chandni Sidhu & Yanlin Zhao & Andreas Eich & Leonard Rößler & Luis H. Orellana & Bernhard M. Fuchs, 2024. "Globally occurring pelagiphage infections create ribosome-deprived cells," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
- Zengliang Jiang & Lai-bao Zhuo & Yan He & Yuanqing Fu & Luqi Shen & Fengzhe Xu & Wanglong Gou & Zelei Miao & Menglei Shuai & Yuhui Liang & Congmei Xiao & Xinxiu Liang & Yunyi Tian & Jiali Wang & Jun T, 2022. "The gut microbiota-bile acid axis links the positive association between chronic insomnia and cardiometabolic diseases," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Zhenzhen Chen & Qiankun He & Tiankun Lu & Jiayi Wu & Gaoli Shi & Luyun He & Hong Zong & Benyu Liu & Pingping Zhu, 2023. "mcPGK1-dependent mitochondrial import of PGK1 promotes metabolic reprogramming and self-renewal of liver TICs," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Jianli Tao & Daniel E. Bauer & Roberto Chiarle, 2023. "Assessing and advancing the safety of CRISPR-Cas tools: from DNA to RNA editing," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Pedro Silva-Pinheiro & Pavel A. Nash & Lindsey Van Haute & Christian D. Mutti & Keira Turner & Michal Minczuk, 2022. "In vivo mitochondrial base editing via adeno-associated viral delivery to mouse post-mitotic tissue," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
- Milva Pepi & Silvano Focardi, 2021. "Antibiotic-Resistant Bacteria in Aquaculture and Climate Change: A Challenge for Health in the Mediterranean Area," IJERPH, MDPI, vol. 18(11), pages 1-31, May.
- Vilma Viliene & Asta Raceviciute-Stupeliene & Saulius Bliznikas & Alius Pockevicius & Monika Nutautaite & Vilma Sasyte, 2022. "The impact of different inclusion levels of whole barley in feed on growth performance, carcass, and gastrointestinal traits of broiler chickens," Czech Journal of Animal Science, Czech Academy of Agricultural Sciences, vol. 67(4), pages 147-156.
- Courtney M. Thomas & Elie Desmond-Le Quéméner & Simonetta Gribaldo & Guillaume Borrel, 2022. "Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Bogna J. Smug & Krzysztof Szczepaniak & Eduardo P. C. Rocha & Stanislaw Dunin-Horkawicz & Rafał J. Mostowy, 2023. "Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Natalia Quinones-Olvera & Siân V. Owen & Lucy M. McCully & Maximillian G. Marin & Eleanor A. Rand & Alice C. Fan & Oluremi J. Martins Dosumu & Kay Paul & Cleotilde E. Sanchez Castaño & Rachel Petherbr, 2024. "Diverse and abundant phages exploit conjugative plasmids," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Yanan Zhao & Jiaojiao Hu & Shan-Shan Yang & Jing Zhong & Jianping Liu & Shuo Wang & Yuzhuo Jiao & Fang Jiang & Ruiyang Zhai & Bingnan Ren & Hua Cong & Yuwei Zhu & Fengtong Han & Jixian Zhang & Yue Xu , 2022. "A redox switch regulates the assembly and anti-CRISPR activity of AcrIIC1," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Friederike S Rossmann & Tomas Racek & Dominique Wobser & Jacek Puchalka & Elaine M Rabener & Matthias Reiger & Antoni P A Hendrickx & Ann-Kristin Diederich & Kirsten Jung & Christoph Klein & Johannes , 2015. "Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing," PLOS Pathogens, Public Library of Science, vol. 11(2), pages 1-17, February.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45663-8. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.