A genetic circuit on a single DNA molecule as an autonomous dissipative nanodevice
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DOI: 10.1038/s41467-024-45186-2
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- S. Okumura & G. Gines & N. Lobato-Dauzier & A. Baccouche & R. Deteix & T. Fujii & Y. Rondelez & A. J. Genot, 2022. "Nonlinear decision-making with enzymatic neural networks," Nature, Nature, vol. 610(7932), pages 496-501, October.
- Bernard Yurke & Andrew J. Turberfield & Allen P. Mills & Friedrich C. Simmel & Jennifer L. Neumann, 2000. "A DNA-fuelled molecular machine made of DNA," Nature, Nature, vol. 406(6796), pages 605-608, August.
- Namiko Mitarai & Ian B Dodd & Michael T Crooks & Kim Sneppen, 2008. "The Generation of Promoter-Mediated Transcriptional Noise in Bacteria," PLOS Computational Biology, Public Library of Science, vol. 4(7), pages 1-9, July.
- Anna-Katharina Pumm & Wouter Engelen & Enzo Kopperger & Jonas Isensee & Matthias Vogt & Viktorija Kozina & Massimo Kube & Maximilian N. Honemann & Eva Bertosin & Martin Langecker & Ramin Golestanian &, 2022. "A DNA origami rotary ratchet motor," Nature, Nature, vol. 607(7919), pages 492-498, July.
- Yoshie Harada & Osamu Ohara & Akira Takatsuki & Hiroyasu Itoh & Nobuo Shimamoto & Kazuhiko Kinosita, 2001. "Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase," Nature, Nature, vol. 409(6816), pages 113-115, January.
- Barbora Lavickova & Nadanai Laohakunakorn & Sebastian J. Maerkl, 2020. "A partially self-regenerating synthetic cell," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
- Lisa M. Alexander & Daniel H. Goldman & Liang M. Wee & Carlos Bustamante, 2019. "Non-equilibrium dynamics of a nascent polypeptide during translation suppress its misfolding," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Keisuke Fujita & Mitsuhiro Iwaki & Toshio Yanagida, 2016. "Transcriptional bursting is intrinsically caused by interplay between RNA polymerases on DNA," Nature Communications, Nature, vol. 7(1), pages 1-10, December.
- Ferdinand Greiss & Shirley S. Daube & Vincent Noireaux & Roy Bar-Ziv, 2020. "From deterministic to fuzzy decision-making in artificial cells," Nature Communications, Nature, vol. 11(1), pages 1-9, December.
- Lulu Qian & Erik Winfree & Jehoshua Bruck, 2011. "Neural network computation with DNA strand displacement cascades," Nature, Nature, vol. 475(7356), pages 368-372, July.
- K. Libicher & R. Hornberger & M. Heymann & H. Mutschler, 2020. "In vitro self-replication and multicistronic expression of large synthetic genomes," Nature Communications, Nature, vol. 11(1), pages 1-8, December.
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