Complex dynamics in a synchronized cell-free genetic clock
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DOI: 10.1038/s41467-022-30478-2
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- Marcel Tigges & Tatiana T. Marquez-Lago & Jörg Stelling & Martin Fussenegger, 2009. "A tunable synthetic mammalian oscillator," Nature, Nature, vol. 457(7227), pages 309-312, January.
- Michael B. Elowitz & Stanislas Leibler, 2000. "A synthetic oscillatory network of transcriptional regulators," Nature, Nature, vol. 403(6767), pages 335-338, January.
- Claus O. Wilke & Jia Lan Wang & Charles Ofria & Richard E. Lenski & Christoph Adami, 2001. "Evolution of digital organisms at high mutation rates leads to survival of the flattest," Nature, Nature, vol. 412(6844), pages 331-333, July.
- Barbora Lavickova & Nadanai Laohakunakorn & Sebastian J. Maerkl, 2020. "A partially self-regenerating synthetic cell," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
- David T. Riglar & David L. Richmond & Laurent Potvin-Trottier & Andrew A. Verdegaal & Alexander D. Naydich & Somenath Bakshi & Emanuele Leoncini & Lorena G. Lyon & Johan Paulsson & Pamela A. Silver, 2019. "Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
- Tal Danino & Octavio Mondragón-Palomino & Lev Tsimring & Jeff Hasty, 2010. "A synchronized quorum of genetic clocks," Nature, Nature, vol. 463(7279), pages 326-330, January.
- Laurent Potvin-Trottier & Nathan D. Lord & Glenn Vinnicombe & Johan Paulsson, 2016. "Synchronous long-term oscillations in a synthetic gene circuit," Nature, Nature, vol. 538(7626), pages 514-517, October.
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Cited by:
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- Jung Hun Park & Gábor Holló & Yolanda Schaerli, 2024. "From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
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