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A DNA origami rotary ratchet motor

Author

Listed:
  • Anna-Katharina Pumm

    (Technische Universität München)

  • Wouter Engelen

    (Technische Universität München)

  • Enzo Kopperger

    (Technische Universität München)

  • Jonas Isensee

    (Max Planck Institute for Dynamics and Self-Organization)

  • Matthias Vogt

    (Technische Universität München)

  • Viktorija Kozina

    (Technische Universität München)

  • Massimo Kube

    (Technische Universität München)

  • Maximilian N. Honemann

    (Technische Universität München)

  • Eva Bertosin

    (Technische Universität München)

  • Martin Langecker

    (Technische Universität München)

  • Ramin Golestanian

    (Max Planck Institute for Dynamics and Self-Organization
    University of Oxford)

  • Friedrich C. Simmel

    (Technische Universität München)

  • Hendrik Dietz

    (Technische Universität München)

Abstract

To impart directionality to the motions of a molecular mechanism, one must overcome the random thermal forces that are ubiquitous on such small scales and in liquid solution at ambient temperature. In equilibrium without energy supply, directional motion cannot be sustained without violating the laws of thermodynamics. Under conditions away from thermodynamic equilibrium, directional motion may be achieved within the framework of Brownian ratchets, which are diffusive mechanisms that have broken inversion symmetry1–5. Ratcheting is thought to underpin the function of many natural biological motors, such as the F1F0-ATPase6–8, and it has been demonstrated experimentally in synthetic microscale systems (for example, to our knowledge, first in ref. 3) and also in artificial molecular motors created by organic chemical synthesis9–12. DNA nanotechnology13 has yielded a variety of nanoscale mechanisms, including pivots, hinges, crank sliders and rotary systems14–17, which can adopt different configurations, for example, triggered by strand-displacement reactions18,19 or by changing environmental parameters such as pH, ionic strength, temperature, external fields and by coupling their motions to those of natural motor proteins20–26. This previous work and considering low-Reynolds-number dynamics and inherent stochasticity27,28 led us to develop a nanoscale rotary motor built from DNA origami that is driven by ratcheting and whose mechanical capabilities approach those of biological motors such as F1F0-ATPase.

Suggested Citation

  • Anna-Katharina Pumm & Wouter Engelen & Enzo Kopperger & Jonas Isensee & Matthias Vogt & Viktorija Kozina & Massimo Kube & Maximilian N. Honemann & Eva Bertosin & Martin Langecker & Ramin Golestanian &, 2022. "A DNA origami rotary ratchet motor," Nature, Nature, vol. 607(7919), pages 492-498, July.
  • Handle: RePEc:nat:nature:v:607:y:2022:i:7919:d:10.1038_s41586-022-04910-y
    DOI: 10.1038/s41586-022-04910-y
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    Citations

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    Cited by:

    1. Ferdinand Greiss & Nicolas Lardon & Leonie Schütz & Yoav Barak & Shirley S. Daube & Elmar Weinhold & Vincent Noireaux & Roy Bar-Ziv, 2024. "A genetic circuit on a single DNA molecule as an autonomous dissipative nanodevice," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    2. Molly F. Parsons & Matthew F. Allan & Shanshan Li & Tyson R. Shepherd & Sakul Ratanalert & Kaiming Zhang & Krista M. Pullen & Wah Chiu & Silvi Rouskin & Mark Bathe, 2023. "3D RNA-scaffolded wireframe origami," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    3. Chapin S. Korosec & Ivan N. Unksov & Pradheebha Surendiran & Roman Lyttleton & Paul M. G. Curmi & Christopher N. Angstmann & Ralf Eichhorn & Heiner Linke & Nancy R. Forde, 2024. "Motility of an autonomous protein-based artificial motor that operates via a burnt-bridge principle," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    4. Daniela Sorrentino & Simona Ranallo & Francesco Ricci & Elisa Franco, 2024. "Developmental assembly of multi-component polymer systems through interconnected synthetic gene networks in vitro," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    5. Jae Young Lee & Heeyuen Koh & Do-Nyun Kim, 2023. "A computational model for structural dynamics and reconfiguration of DNA assemblies," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    6. Tomoya Maruyama & Jing Gong & Masahiro Takinoue, 2024. "Temporally controlled multistep division of DNA droplets for dynamic artificial cells," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    7. Zhang, Peng-Juan & Zhang, Ji-Qiang & Wang, Peng & Huo, Jie & Wang, Xu-Ming, 2024. "Directed transport of two-coupled particles under the coordination of the coupling and an asymmetric potential," Chaos, Solitons & Fractals, Elsevier, vol. 182(C).

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