LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat
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DOI: 10.1038/s41467-023-43178-2
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- Ruiqiang Ye & Meiyue Wang & Hao Du & Shweta Chhajed & Jin Koh & Kun-hsiang Liu & Jinwoo Shin & Yue Wu & Lin Shi & Lin Xu & Sixue Chen & Yijing Zhang & Jen Sheen, 2022. "Glucose-driven TOR–FIE–PRC2 signalling controls plant development," Nature, Nature, vol. 609(7929), pages 986-993, September.
- Ming-Cheng Luo & Yong Q. Gu & Daniela Puiu & Hao Wang & Sven O. Twardziok & Karin R. Deal & Naxin Huo & Tingting Zhu & Le Wang & Yi Wang & Patrick E. McGuire & Shuyang Liu & Hai Long & Ramesh K. Ramas, 2017. "Genome sequence of the progenitor of the wheat D genome Aegilops tauschii," Nature, Nature, vol. 551(7681), pages 498-502, November.
- Hong-Qing Ling & Bin Ma & Xiaoli Shi & Hui Liu & Lingli Dong & Hua Sun & Yinghao Cao & Qiang Gao & Shusong Zheng & Ye Li & Ying Yu & Huilong Du & Ming Qi & Yan Li & Hongwei Lu & Hua Yu & Yan Cui & Nin, 2018. "Genome sequence of the progenitor of wheat A subgenome Triticum urartu," Nature, Nature, vol. 557(7705), pages 424-428, May.
- Yuyun Zhang & Zijuan Li & Jinyi Liu & Yu’e Zhang & Luhuan Ye & Yuan Peng & Haoyu Wang & Huishan Diao & Yu Ma & Meiyue Wang & Yilin Xie & Tengfei Tang & Yili Zhuang & Wan Teng & Yiping Tong & Wenli Zha, 2022. "Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
- Christine Queitsch & Todd A. Sangster & Susan Lindquist, 2002. "Hsp90 as a capacitor of phenotypic variation," Nature, Nature, vol. 417(6889), pages 618-624, June.
- Yuannian Jiao & Norman J. Wickett & Saravanaraj Ayyampalayam & André S. Chanderbali & Lena Landherr & Paula E. Ralph & Lynn P. Tomsho & Yi Hu & Haiying Liang & Pamela S. Soltis & Douglas E. Soltis & S, 2011. "Ancestral polyploidy in seed plants and angiosperms," Nature, Nature, vol. 473(7345), pages 97-100, May.
- Corbin E. Meacham & Sean J. Morrison, 2013. "Tumour heterogeneity and cancer cell plasticity," Nature, Nature, vol. 501(7467), pages 328-337, September.
- Lun Zhao & Liang Xie & Qing Zhang & Weizhi Ouyang & Li Deng & Pengpeng Guan & Meng Ma & Yue Li & Ying Zhang & Qin Xiao & Jingwen Zhang & Hongmeijuan Li & Shunyao Wang & Jiangwei Man & Zhilin Cao & Qin, 2020. "Integrative analysis of reference epigenomes in 20 rice varieties," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
- Weilong Guo & Mingming Xin & Zihao Wang & Yingyin Yao & Zhaorong Hu & Wanjun Song & Kuohai Yu & Yongming Chen & Xiaobo Wang & Panfeng Guan & Rudi Appels & Huiru Peng & Zhongfu Ni & Qixin Sun, 2020. "Origin and adaptation to high altitude of Tibetan semi-wild wheat," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
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