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Ancestral polyploidy in seed plants and angiosperms

Author

Listed:
  • Yuannian Jiao

    (Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park
    Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park)

  • Norman J. Wickett

    (Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park)

  • Saravanaraj Ayyampalayam

    (University of Georgia)

  • André S. Chanderbali

    (University of Florida)

  • Lena Landherr

    (Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park)

  • Paula E. Ralph

    (Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park)

  • Lynn P. Tomsho

    (Center for Comparative Genomics, Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park)

  • Yi Hu

    (Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park)

  • Haiying Liang

    (Clemson University)

  • Pamela S. Soltis

    (Florida Museum of Natural History, University of Florida)

  • Douglas E. Soltis

    (University of Florida)

  • Sandra W. Clifton

    (The Genome Center at Washington University)

  • Scott E. Schlarbaum

    (Wildlife & Fisheries, Institute of Agriculture, The University of Tennessee)

  • Stephan C. Schuster

    (Center for Comparative Genomics, Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park)

  • Hong Ma

    (Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park
    Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park
    State Key Laboratory of Genetic Engineering, School of Life Sciences, Institute of Plant Biology, Center for Evolutionary Biology, Fudan University
    Institute of Biomedical Sciences, Fudan University)

  • Jim Leebens-Mack

    (University of Georgia)

  • Claude W. dePamphilis

    (Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park
    Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park)

Abstract

Double dealing in the plant genome Gene and genome duplications are major factors in plant evolution. A high-resolution phylogenomic analysis of genes from sequenced genomes and more than 12.6 million expressed-sequence tags from pivotal gymnosperm and basal angiosperm species has identified two ancient whole-genome duplications. One occurred in the common ancestor of extant seed plants and the other in the common ancestor of the angiosperms.

Suggested Citation

  • Yuannian Jiao & Norman J. Wickett & Saravanaraj Ayyampalayam & André S. Chanderbali & Lena Landherr & Paula E. Ralph & Lynn P. Tomsho & Yi Hu & Haiying Liang & Pamela S. Soltis & Douglas E. Soltis & S, 2011. "Ancestral polyploidy in seed plants and angiosperms," Nature, Nature, vol. 473(7345), pages 97-100, May.
    • Handle: RePEc:nat:nature:v:473:y:2011:i:7345:d:10.1038_nature09916
    DOI: 10.1038/nature09916
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    1. Fei Shen & Shixiao Xu & Qi Shen & Changwei Bi & Martin A. Lysak, 2023. "The allotetraploid horseradish genome provides insights into subgenome diversification and formation of critical traits," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    2. Taikui Zhang & Weichen Huang & Lin Zhang & De-Zhu Li & Ji Qi & Hong Ma, 2024. "Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages," Nature Communications, Nature, vol. 15(1), pages 1-27, December.
    3. Kanae Nishii & Frank Wright & Yun-Yu Chen & Michael Möller, 2018. "Tangled history of a multigene family: The evolution of ISOPENTENYLTRANSFERASE genes," PLOS ONE, Public Library of Science, vol. 13(8), pages 1-23, August.
    4. Andre S. Chanderbali & Lingling Jin & Qiaoji Xu & Yue Zhang & Jingbo Zhang & Shuguang Jian & Emily Carroll & David Sankoff & Victor A. Albert & Dianella G. Howarth & Douglas E. Soltis & Pamela S. Solt, 2022. "Buxus and Tetracentron genomes help resolve eudicot genome history," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    5. Jamie McCann & Gerald M Schneeweiss & Tod F Stuessy & Jose L Villaseñor & Hanna Weiss-Schneeweiss, 2016. "The Impact of Reconstruction Methods, Phylogenetic Uncertainty and Branch Lengths on Inference of Chromosome Number Evolution in American Daisies (Melampodium, Asteraceae)," PLOS ONE, Public Library of Science, vol. 11(9), pages 1-23, September.
    6. Ivelin Iliev Rizov, 2016. "European Coexistence Bureau (ECoB) - Best Practice Document for coexistence of genetically modified cotton with conventional and organic farming," JRC Research Reports JRC101485, Joint Research Centre.
    7. Fei Shen & Yajuan Qin & Rui Wang & Xin Huang & Ying Wang & Tiangang Gao & Junna He & Yue Zhou & Yuannian Jiao & Jianhua Wei & Lei Li & Xiaozeng Yang, 2023. "Comparative genomics reveals a unique nitrogen-carbon balance system in Asteraceae," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    8. Zijuan Li & Yuyun Zhang & Ci-Hang Ding & Yan Chen & Haoyu Wang & Jinyu Zhang & Songbei Ying & Meiyue Wang & Rongzhi Zhang & Jinyi Liu & Yilin Xie & Tengfei Tang & Huishan Diao & Luhuan Ye & Yili Zhuan, 2023. "LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    9. Haomiao Yu & Yuan Yuan & Sijiao Wang & Guoming Wu & Haishen Xu & Jianglan Wei & Le Ju & Yulin Huang & Hui Chen, 2021. "Interspecies Evolution and Networks Investigation of the Auxin Response Protein (AUX/IAA) Family Reveals the Adaptation Mechanisms of Halophytes Crops in Nitrogen Starvation Agroecological Environment," Agriculture, MDPI, vol. 11(8), pages 1-23, August.
    10. Xiaowen Shi & Hua Yang & Chen Chen & Jie Hou & Tieming Ji & Jianlin Cheng & James A. Birchler, 2022. "Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    11. G. Yahya & P. Menges & P. S. Amponsah & D. A. Ngandiri & D. Schulz & A. Wallek & N. Kulak & M. Mann & P. Cramer & V. Savage & M. Räschle & Z. Storchova, 2022. "Sublinear scaling of the cellular proteome with ploidy," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    12. Ping HE & Linguang LI & Lailiang CHENG & Haibo WANG & Yuansheng CHANG, 2018. "Variation in ploidy level and morphological traits in the progeny of the triploid apple variety Jonagold," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 54(3), pages 135-142.
    13. Min-Rui-Xuan Xu & Zhen-Yang Liao & Jordan R. Brock & Kang Du & Guo-Yin Li & Zhi-Qiang Chen & Ying-Hao Wang & Zhong-Nan Gao & Gaurav Agarwal & Kevin H-C Wei & Feng Shao & Shuai Pang & Adrian E. Platts , 2023. "Maternal dominance contributes to subgenome differentiation in allopolyploid fishes," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    14. Melisa Olave & Alexander Nater & Andreas F. Kautt & Axel Meyer, 2022. "Early stages of sympatric homoploid hybrid speciation in crater lake cichlid fishes," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    15. Yuyun Zhang & Zijuan Li & Jinyi Liu & Yu’e Zhang & Luhuan Ye & Yuan Peng & Haoyu Wang & Huishan Diao & Yu Ma & Meiyue Wang & Yilin Xie & Tengfei Tang & Yili Zhuang & Wan Teng & Yiping Tong & Wenli Zha, 2022. "Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    16. Xiao Feng & Qipian Chen & Weihong Wu & Jiexin Wang & Guohong Li & Shaohua Xu & Shao Shao & Min Liu & Cairong Zhong & Chung-I Wu & Suhua Shi & Ziwen He, 2024. "Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    17. Chao Fang & Ning Jiang & Scott J. Teresi & Adrian E. Platts & Gaurav Agarwal & Chad Niederhuth & Patrick P. Edger & Jiming Jiang, 2024. "Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

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