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Nuclear cGAS restricts L1 retrotransposition by promoting TRIM41-mediated ORF2p ubiquitination and degradation

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  • Zhengyi Zhen

    (Tongji University
    Tongji University
    Tongji University)

  • Yu Chen

    (Tongji University
    Tongji University)

  • Haiyan Wang

    (Tongji University)

  • Huanyin Tang

    (Tongji University)

  • Haiping Zhang

    (Tongji University
    Tongji University)

  • Haipeng Liu

    (Tongji University)

  • Ying Jiang

    (Tongji University
    Tongji University)

  • Zhiyong Mao

    (Tongji University
    Tongji University
    Tongji University)

Abstract

Cyclic GMP–AMP synthase (cGAS), initially identified as a cytosolic DNA sensor, detects DNA fragments to trigger an innate immune response. Recently, accumulating evidence reveals the presence of cGAS within the nucleus. However, the biological functions of nuclear cGAS are not fully understood. Here, we demonstrate that nuclear cGAS represses LINE-1 (L1) retrotransposition to preserve genome integrity in human cells. Mechanistically, the E3 ligase TRIM41 interacts with and ubiquitinates ORF2p to influence its stability, and cGAS enhances the association of ORF2p with TRIM41, thereby promoting TRIM41-mediated ORF2p degradation and the suppression of L1 retrotransposition. In response to DNA damage, cGAS is phosphorylated at serine residues 120 and 305 by CHK2, which promotes cGAS-TRIM41 association, facilitating TRIM41-mediated ORF2p degradation. Moreover, we show that nuclear cGAS mediates the repression of L1 retrotransposition in senescent cells induced by DNA damage agents. We also identify several cancer-associated cGAS mutations that abolish the suppressive effect on L1 retrotransposition by disrupting the CHK2-cGAS-TRIM41-ORF2p regulatory axis. Together, these findings indicate that nuclear cGAS exhibits an inhibitory function in L1 retrotransposition which could provide avenues for future interventions in both aging and tumorigenesis.

Suggested Citation

  • Zhengyi Zhen & Yu Chen & Haiyan Wang & Huanyin Tang & Haiping Zhang & Haipeng Liu & Ying Jiang & Zhiyong Mao, 2023. "Nuclear cGAS restricts L1 retrotransposition by promoting TRIM41-mediated ORF2p ubiquitination and degradation," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43001-y
    DOI: 10.1038/s41467-023-43001-y
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    1. Wendan Ren & Huitao Fan & Sara A. Grimm & Jae Jin Kim & Linhui Li & Yiran Guo & Christopher James Petell & Xiao-Feng Tan & Zhi-Min Zhang & John P. Coan & Jiekai Yin & Dae In Kim & Linfeng Gao & Ling C, 2021. "DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    2. Marco Cecco & Takahiro Ito & Anna P. Petrashen & Amy E. Elias & Nicholas J. Skvir & Steven W. Criscione & Alberto Caligiana & Greta Brocculi & Emily M. Adney & Jef D. Boeke & Oanh Le & Christian Beaus, 2019. "L1 drives IFN in senescent cells and promotes age-associated inflammation," Nature, Nature, vol. 566(7742), pages 73-78, February.
    3. Haipeng Liu & Haiping Zhang & Xiangyang Wu & Dapeng Ma & Juehui Wu & Lin Wang & Yan Jiang & Yiyan Fei & Chenggang Zhu & Rong Tan & Peter Jungblut & Gang Pei & Anca Dorhoi & Qiaoling Yan & Fan Zhang & , 2018. "Nuclear cGAS suppresses DNA repair and promotes tumorigenesis," Nature, Nature, vol. 563(7729), pages 131-136, November.
    4. Nicole G. Coufal & José L. Garcia-Perez & Grace E. Peng & Gene W. Yeo & Yangling Mu & Michael T. Lovci & Maria Morell & K. Sue O’Shea & John V. Moran & Fred H. Gage, 2009. "L1 retrotransposition in human neural progenitor cells," Nature, Nature, vol. 460(7259), pages 1127-1131, August.
    5. Ganesh R. Pathare & Alexiane Decout & Selene Glück & Simone Cavadini & Kristina Makasheva & Ruud Hovius & Georg Kempf & Joscha Weiss & Zuzanna Kozicka & Baptiste Guey & Pauline Melenec & Beat Fierz & , 2020. "Structural mechanism of cGAS inhibition by the nucleosome," Nature, Nature, vol. 587(7835), pages 668-672, November.
    6. Baoyu Zhao & Pengbiao Xu & Chesley M. Rowlett & Tao Jing & Omkar Shinde & Yuanjiu Lei & A. Phillip West & Wenshe Ray Liu & Pingwei Li, 2020. "The molecular basis of tight nuclear tethering and inactivation of cGAS," Nature, Nature, vol. 587(7835), pages 673-677, November.
    7. Michael Van Meter & Mehr Kashyap & Sarallah Rezazadeh & Anthony J. Geneva & Timothy D. Morello & Andrei Seluanov & Vera Gorbunova, 2014. "SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age," Nature Communications, Nature, vol. 5(1), pages 1-10, December.
    8. Marco Cecco & Takahiro Ito & Anna P. Petrashen & Amy E. Elias & Nicholas J. Skvir & Steven W. Criscione & Alberto Caligiana & Greta Brocculi & Emily M. Adney & Jef D. Boeke & Oanh Le & Christian Beaus, 2019. "Author Correction: L1 drives IFN in senescent cells and promotes age-associated inflammation," Nature, Nature, vol. 572(7767), pages 5-5, August.
    9. Déborah Bourc'his & Timothy H. Bestor, 2004. "Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L," Nature, Nature, vol. 431(7004), pages 96-99, September.
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