IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-42074-z.html
   My bibliography  Save this article

Oxygen respiration and polysaccharide degradation by a sulfate-reducing acidobacterium

Author

Listed:
  • Stefan Dyksma

    (Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Department of Microorganisms)

  • Michael Pester

    (Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Department of Microorganisms
    Technical University of Braunschweig, Institute of Microbiology)

Abstract

Sulfate-reducing microorganisms represent a globally important link between the sulfur and carbon cycles. Recent metagenomic surveys expanded the diversity of microorganisms putatively involved in sulfate reduction underscoring our incomplete understanding of this functional guild. Here, we use genome-centric metatranscriptomics to study the energy metabolism of Acidobacteriota that carry genes for dissimilation of sulfur compounds in a long-term continuous culture running under alternating anoxic and oxic conditions. Differential gene expression analysis reveals the unique metabolic flexibility of a pectin-degrading acidobacterium to switch from sulfate to oxygen reduction when shifting from anoxic to oxic conditions. The combination of facultative anaerobiosis and polysaccharide degradation expands the metabolic versatility among sulfate-reducing microorganisms. Our results highlight that sulfate reduction and aerobic respiration are not mutually exclusive in the same organism, sulfate reducers can mineralize organic polymers, and anaerobic mineralization of complex organic matter is not necessarily a multi-step process involving different microbial guilds but can be bypassed by a single microbial species.

Suggested Citation

  • Stefan Dyksma & Michael Pester, 2023. "Oxygen respiration and polysaccharide degradation by a sulfate-reducing acidobacterium," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42074-z
    DOI: 10.1038/s41467-023-42074-z
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-42074-z
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-42074-z?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Ben J. Woodcroft & Caitlin M. Singleton & Joel A. Boyd & Paul N. Evans & Joanne B. Emerson & Ahmed A. F. Zayed & Robert D. Hoelzle & Timothy O. Lamberton & Carmody K. McCalley & Suzanne B. Hodgkins & , 2018. "Genome-centric view of carbon processing in thawing permafrost," Nature, Nature, vol. 560(7716), pages 49-54, August.
    2. Américo G. Duarte & Teresa Catarino & Gaye F. White & Diana Lousa & Sinje Neukirchen & Cláudio M. Soares & Filipa L. Sousa & Thomas A. Clarke & Inês A. C. Pereira, 2018. "An electrogenic redox loop in sulfate reduction reveals a likely widespread mechanism of energy conservation," Nature Communications, Nature, vol. 9(1), pages 1-11, December.
    3. Didier Ndeh & Artur Rogowski & Alan Cartmell & Ana S. Luis & Arnaud Baslé & Joseph Gray & Immacolata Venditto & Jonathon Briggs & Xiaoyang Zhang & Aurore Labourel & Nicolas Terrapon & Fanny Buffetto &, 2017. "Correction: Corrigendum: Complex pectin metabolism by gut bacteria reveals novel catalytic functions," Nature, Nature, vol. 548(7669), pages 612-612, August.
    4. Didier Ndeh & Artur Rogowski & Alan Cartmell & Ana S. Luis & Arnaud Baslé & Joseph Gray & Immacolata Venditto & Jonathon Briggs & Xiaoyang Zhang & Aurore Labourel & Nicolas Terrapon & Fanny Buffetto &, 2017. "Complex pectin metabolism by gut bacteria reveals novel catalytic functions," Nature, Nature, vol. 544(7648), pages 65-70, April.
    5. Anthony D. Baughn & Michael H. Malamy, 2004. "The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen," Nature, Nature, vol. 427(6973), pages 441-444, January.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Diego E. Sastre & Nazneen Sultana & Marcos V. A. S. Navarro & Maros Huliciak & Jonathan Du & Javier O. Cifuente & Maria Flowers & Xu Liu & Pete Lollar & Beatriz Trastoy & Marcelo E. Guerin & Eric J. S, 2024. "Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    2. Hao-Tian Wang & Zi-Long Wang & Kuan Chen & Ming-Ju Yao & Meng Zhang & Rong-Shen Wang & Jia-He Zhang & Hans Ågren & Fu-Dong Li & Junhao Li & Xue Qiao & Min Ye, 2023. "Insights into the missing apiosylation step in flavonoid apiosides biosynthesis of Leguminosae plants," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    3. Yonggan Sun & Qixing Nie & Shanshan Zhang & Huijun He & Sheng Zuo & Chunhua Chen & Jingrui Yang & Haihong Chen & Jielun Hu & Song Li & Jiaobo Cheng & Baojie Zhang & Zhitian Zheng & Shijie Pan & Ping H, 2023. "Parabacteroides distasonis ameliorates insulin resistance via activation of intestinal GPR109a," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    4. María Ángeles Rivas & Rocío Casquete & Alberto Martín & María de Guía Córdoba & Emilio Aranda & María José Benito, 2021. "Strategies to Increase the Biological and Biotechnological Value of Polysaccharides from Agricultural Waste for Application in Healthy Nutrition," IJERPH, MDPI, vol. 18(11), pages 1-19, June.
    5. Erika C. Freeman & Erik J. S. Emilson & Thorsten Dittmar & Lucas P. P. Braga & Caroline E. Emilson & Tobias Goldhammer & Christine Martineau & Gabriel Singer & Andrew J. Tanentzap, 2024. "Universal microbial reworking of dissolved organic matter along environmental gradients," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    6. Alei Geng & Nana Li & Anaiza Zayas-Garriga & Rongrong Xie & Daochen Zhu & Jianzhong Sun, 2024. "Direct Conversion of Minimally Pretreated Corncob by Enzyme-Intensified Microbial Consortia," Agriculture, MDPI, vol. 14(9), pages 1-13, September.
    7. Juan Pedro Rodríguez-López & Chihua Wu & Tatiana A. Vishnivetskaya & Julian B. Murton & Wenqiang Tang & Chao Ma, 2022. "Permafrost in the Cretaceous supergreenhouse," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    8. Lauren F. Messer & David G. Bourne & Steven J. Robbins & Megan Clay & Sara C. Bell & Simon J. McIlroy & Gene W. Tyson, 2024. "A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    9. Paul O. Sheridan & Yiyu Meng & Tom A. Williams & Cécile Gubry-Rangin, 2022. "Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    10. Xianzhe Gong & Álvaro Rodríguez Río & Le Xu & Zhiyi Chen & Marguerite V. Langwig & Lei Su & Mingxue Sun & Jaime Huerta-Cepas & Valerie Anda & Brett J. Baker, 2022. "New globally distributed bacterial phyla within the FCB superphylum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    11. Shaoming Gao & David Paez-Espino & Jintian Li & Hongxia Ai & Jieliang Liang & Zhenhao Luo & Jin Zheng & Hao Chen & Wensheng Shu & Linan Huang, 2022. "Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    12. Luyao Kang & Yutong Song & Rachel Mackelprang & Dianye Zhang & Shuqi Qin & Leiyi Chen & Linwei Wu & Yunfeng Peng & Yuanhe Yang, 2024. "Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    13. Ping Han & Xiufeng Tang & Hanna Koch & Xiyang Dong & Lijun Hou & Danhe Wang & Qian Zhao & Zhe Li & Min Liu & Sebastian Lücker & Guitao Shi, 2024. "Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica," Nature Communications, Nature, vol. 15(1), pages 1-12, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42074-z. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.