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Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota

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  • Paul O. Sheridan

    (University of Aberdeen
    University of Bristol)

  • Yiyu Meng

    (University of Aberdeen)

  • Tom A. Williams

    (University of Bristol)

  • Cécile Gubry-Rangin

    (University of Aberdeen)

Abstract

The Terrestrial Miscellaneous Euryarchaeota Group has been identified in various environments, and the single genome investigated thus far suggests that these archaea are anaerobic sulfite reducers. We assemble 35 new genomes from this group that, based on genome analysis, appear to possess aerobic and facultative anaerobic lifestyles and may oxidise rather than reduce sulfite. We propose naming this order (representing 16 genera) “Lutacidiplasmatales” due to their occurrence in various acidic environments and placement within the phylum Thermoplasmatota. Phylum-level analysis reveals that Thermoplasmatota evolution had been punctuated by several periods of high levels of novel gene family acquisition. Several essential metabolisms, such as aerobic respiration and acid tolerance, were likely acquired independently by divergent lineages through convergent evolution rather than inherited from a common ancestor. Ultimately, this study describes the terrestrially prevalent Lutacidiciplasmatales and highlights convergent evolution as an important driving force in the evolution of archaeal lineages.

Suggested Citation

  • Paul O. Sheridan & Yiyu Meng & Tom A. Williams & Cécile Gubry-Rangin, 2022. "Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31847-7
    DOI: 10.1038/s41467-022-31847-7
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    References listed on IDEAS

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    1. Benjamin J. Tully, 2019. "Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
    2. Paul O. Sheridan & Sebastien Raguideau & Christopher Quince & Jennifer Holden & Lihong Zhang & Tom A. Williams & Cécile Gubry-Rangin, 2020. "Gene duplication drives genome expansion in a major lineage of Thaumarchaeota," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
    3. Shijulal Nelson-Sathi & Filipa L. Sousa & Mayo Roettger & Nabor Lozada-Chávez & Thorsten Thiergart & Arnold Janssen & David Bryant & Giddy Landan & Peter Schönheit & Bettina Siebers & James O. McInern, 2015. "Origins of major archaeal clades correspond to gene acquisitions from bacteria," Nature, Nature, vol. 517(7532), pages 77-80, January.
    4. Ricardo J. Eloy Alves & Bui Quang Minh & Tim Urich & Arndt Haeseler & Christa Schleper, 2018. "Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes," Nature Communications, Nature, vol. 9(1), pages 1-17, December.
    5. Anthony D. Baughn & Michael H. Malamy, 2004. "The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen," Nature, Nature, vol. 427(6973), pages 441-444, January.
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    Cited by:

    1. Mengzhi Ji & Jiayin Zhou & Yan Li & Kai Ma & Wen Song & Yueyue Li & Jizhong Zhou & Qichao Tu, 2024. "Biodiversity of mudflat intertidal viromes along the Chinese coasts," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    2. Paul O. Sheridan & Yiyu Meng & Tom A. Williams & Cécile Gubry-Rangin, 2023. "Genomics of soil depth niche partitioning in the Thaumarchaeota family Gagatemarchaeaceae," Nature Communications, Nature, vol. 14(1), pages 1-14, December.

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