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A common human MLKL polymorphism confers resistance to negative regulation by phosphorylation

Author

Listed:
  • Sarah E. Garnish

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Katherine R. Martin

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Maria Kauppi

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Victoria E. Jackson

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Rebecca Ambrose

    (Hudson Institute of Medical Research
    Monash University)

  • Vik Ven Eng

    (Hudson Institute of Medical Research
    Monash University)

  • Shene Chiou

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Yanxiang Meng

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Daniel Frank

    (The Walter and Eliza Hall Institute)

  • Emma C. Tovey Crutchfield

    (The Walter and Eliza Hall Institute
    Dentistry and Health Sciences)

  • Komal M. Patel

    (The Walter and Eliza Hall Institute)

  • Annette V. Jacobsen

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Georgia K. Atkin-Smith

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Ladina Rago

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Marcel Doerflinger

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Christopher R. Horne

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Cathrine Hall

    (The Walter and Eliza Hall Institute)

  • Samuel N. Young

    (The Walter and Eliza Hall Institute)

  • Matthew Cook

    (Australian National University
    University of Cambridge)

  • Vicki Athanasopoulos

    (Australian National University)

  • Carola G. Vinuesa

    (Australian National University
    Australian National University
    The Francis Crick Institute
    University College London)

  • Kate E. Lawlor

    (Hudson Institute of Medical Research
    Monash University)

  • Ian P. Wicks

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Gregor Ebert

    (Technical University of Munich/Helmholtz Munich)

  • Ashley P. Ng

    (The Walter and Eliza Hall Institute
    Department of Medical Biology
    The Royal Melbourne Hospital and Peter MacCallum Cancer Centre)

  • Charlotte A. Slade

    (The Walter and Eliza Hall Institute
    Department of Medical Biology
    Royal Melbourne Hospital)

  • Jaclyn S. Pearson

    (Hudson Institute of Medical Research
    Monash University
    Monash University)

  • André L. Samson

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • John Silke

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • James M. Murphy

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

  • Joanne M. Hildebrand

    (The Walter and Eliza Hall Institute
    Department of Medical Biology)

Abstract

Across the globe, 2-3% of humans carry the p.Ser132Pro single nucleotide polymorphism in MLKL, the terminal effector protein of the inflammatory form of programmed cell death, necroptosis. Here we show that this substitution confers a gain in necroptotic function in human cells, with more rapid accumulation of activated MLKLS132P in biological membranes and MLKLS132P overriding pharmacological and endogenous inhibition of MLKL. In mouse cells, the equivalent Mlkl S131P mutation confers a gene dosage dependent reduction in sensitivity to TNF-induced necroptosis in both hematopoietic and non-hematopoietic cells, but enhanced sensitivity to IFN-β induced death in non-hematopoietic cells. In vivo, MlklS131P homozygosity reduces the capacity to clear Salmonella from major organs and retards recovery of hematopoietic stem cells. Thus, by dysregulating necroptosis, the S131P substitution impairs the return to homeostasis after systemic challenge. Present day carriers of the MLKL S132P polymorphism may be the key to understanding how MLKL and necroptosis modulate the progression of complex polygenic human disease.

Suggested Citation

  • Sarah E. Garnish & Katherine R. Martin & Maria Kauppi & Victoria E. Jackson & Rebecca Ambrose & Vik Ven Eng & Shene Chiou & Yanxiang Meng & Daniel Frank & Emma C. Tovey Crutchfield & Komal M. Patel & , 2023. "A common human MLKL polymorphism confers resistance to negative regulation by phosphorylation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41724-6
    DOI: 10.1038/s41467-023-41724-6
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    References listed on IDEAS

    as
    1. Konrad J. Karczewski & Laurent C. Francioli & Grace Tiao & Beryl B. Cummings & Jessica Alföldi & Qingbo Wang & Ryan L. Collins & Kristen M. Laricchia & Andrea Ganna & Daniel P. Birnbaum & Laura D. Gau, 2020. "The mutational constraint spectrum quantified from variation in 141,456 humans," Nature, Nature, vol. 581(7809), pages 434-443, May.
    2. Emma J. Petrie & Jarrod J. Sandow & Annette V. Jacobsen & Brian J. Smith & Michael D. W. Griffin & Isabelle S. Lucet & Weiwen Dai & Samuel N. Young & Maria C. Tanzer & Ahmad Wardak & Lung-Yu Liang & A, 2018. "Conformational switching of the pseudokinase domain promotes human MLKL tetramerization and cell death by necroptosis," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
    3. Yanxiang Meng & Katherine A. Davies & Cheree Fitzgibbon & Samuel N. Young & Sarah E. Garnish & Christopher R. Horne & Cindy Luo & Jean-Marc Garnier & Lung-Yu Liang & Angus D. Cowan & Andre L. Samson &, 2021. "Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    4. Adrian Cortes & Sara L. Pulit & Paul J. Leo & Jenny J. Pointon & Philip C. Robinson & Michael H. Weisman & Michael Ward & Lianne S. Gensler & Xiaodong Zhou & Henri-Jean Garchon & Gilles Chiocchia & Jo, 2015. "Major histocompatibility complex associations of ankylosing spondylitis are complex and involve further epistasis with ERAP1," Nature Communications, Nature, vol. 6(1), pages 1-8, November.
    5. Joanne M. Hildebrand & Maria Kauppi & Ian J. Majewski & Zikou Liu & Allison J. Cox & Sanae Miyake & Emma J. Petrie & Michael A. Silk & Zhixiu Li & Maria C. Tanzer & Gabriela Brumatti & Samuel N. Young, 2020. "A missense mutation in the MLKL brace region promotes lethal neonatal inflammation and hematopoietic dysfunction," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
    6. Sarah E. Garnish & Yanxiang Meng & Akiko Koide & Jarrod J. Sandow & Eric Denbaum & Annette V. Jacobsen & Wayland Yeung & Andre L. Samson & Christopher R. Horne & Cheree Fitzgibbon & Samuel N. Young & , 2021. "Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
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    1. Yanxiang Meng & Sarah E. Garnish & Katherine A. Davies & Katrina A. Black & Andrew P. Leis & Christopher R. Horne & Joanne M. Hildebrand & Hanadi Hoblos & Cheree Fitzgibbon & Samuel N. Young & Toby Di, 2023. "Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization," Nature Communications, Nature, vol. 14(1), pages 1-18, December.

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