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Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis

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  • Yanxiang Meng

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Katherine A. Davies

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Cheree Fitzgibbon

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Samuel N. Young

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade)

  • Sarah E. Garnish

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Christopher R. Horne

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Cindy Luo

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade)

  • Jean-Marc Garnier

    (SYNthesis med chem, 30 Flemington Rd)

  • Lung-Yu Liang

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Angus D. Cowan

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Andre L. Samson

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Guillaume Lessene

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Jarrod J. Sandow

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • Peter E. Czabotar

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

  • James M. Murphy

    (Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade
    Department of Medical Biology, University of Melbourne)

Abstract

The ancestral origins of the lytic cell death mode, necroptosis, lie in host defense. However, the dysregulation of necroptosis in inflammatory diseases has led to widespread interest in targeting the pathway therapeutically. This mode of cell death is executed by the terminal effector, the MLKL pseudokinase, which is licensed to kill following phosphorylation by its upstream regulator, RIPK3 kinase. The precise molecular details underlying MLKL activation are still emerging and, intriguingly, appear to mechanistically-diverge between species. Here, we report the structure of the human RIPK3 kinase domain alone and in complex with the MLKL pseudokinase. These structures reveal how human RIPK3 structurally differs from its mouse counterpart, and how human RIPK3 maintains MLKL in an inactive conformation prior to induction of necroptosis. Residues within the RIPK3:MLKL C-lobe interface are crucial to complex assembly and necroptotic signaling in human cells, thereby rationalizing the strict species specificity governing RIPK3 activation of MLKL.

Suggested Citation

  • Yanxiang Meng & Katherine A. Davies & Cheree Fitzgibbon & Samuel N. Young & Sarah E. Garnish & Christopher R. Horne & Cindy Luo & Jean-Marc Garnier & Lung-Yu Liang & Angus D. Cowan & Andre L. Samson &, 2021. "Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27032-x
    DOI: 10.1038/s41467-021-27032-x
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    1. Katherine A. Davies & Cheree Fitzgibbon & Samuel N. Young & Sarah E. Garnish & Wayland Yeung & Diane Coursier & Richard W. Birkinshaw & Jarrod J. Sandow & Wil I. L. Lehmann & Lung-Yu Liang & Isabelle , 2020. "Distinct pseudokinase domain conformations underlie divergent activation mechanisms among vertebrate MLKL orthologues," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
    2. Emma J. Petrie & Jarrod J. Sandow & Annette V. Jacobsen & Brian J. Smith & Michael D. W. Griffin & Isabelle S. Lucet & Weiwen Dai & Samuel N. Young & Maria C. Tanzer & Ahmad Wardak & Lung-Yu Liang & A, 2018. "Conformational switching of the pseudokinase domain promotes human MLKL tetramerization and cell death by necroptosis," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
    3. Shin Murai & Yoshifumi Yamaguchi & Yoshitaka Shirasaki & Mai Yamagishi & Ryodai Shindo & Joanne M. Hildebrand & Ryosuke Miura & Osamu Nakabayashi & Mamoru Totsuka & Taichiro Tomida & Satomi Adachi-Aka, 2018. "A FRET biosensor for necroptosis uncovers two different modes of the release of DAMPs," Nature Communications, Nature, vol. 9(1), pages 1-17, December.
    4. Joanne M. Hildebrand & Maria Kauppi & Ian J. Majewski & Zikou Liu & Allison J. Cox & Sanae Miyake & Emma J. Petrie & Michael A. Silk & Zhixiu Li & Maria C. Tanzer & Gabriela Brumatti & Samuel N. Young, 2020. "A missense mutation in the MLKL brace region promotes lethal neonatal inflammation and hematopoietic dysfunction," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
    5. Sarah E. Garnish & Yanxiang Meng & Akiko Koide & Jarrod J. Sandow & Eric Denbaum & Annette V. Jacobsen & Wayland Yeung & Andre L. Samson & Christopher R. Horne & Cheree Fitzgibbon & Samuel N. Young & , 2021. "Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    6. Xia-lian Wu & Hong Hu & Xing-qi Dong & Jing Zhang & Jian Wang & Charles D. Schwieters & Jing Liu & Guo-xiang Wu & Bing Li & Jing-yu Lin & Hua-yi Wang & Jun-xia Lu, 2021. "The amyloid structure of mouse RIPK3 (receptor interacting protein kinase 3) in cell necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
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    Cited by:

    1. Sarah E. Garnish & Katherine R. Martin & Maria Kauppi & Victoria E. Jackson & Rebecca Ambrose & Vik Ven Eng & Shene Chiou & Yanxiang Meng & Daniel Frank & Emma C. Tovey Crutchfield & Komal M. Patel & , 2023. "A common human MLKL polymorphism confers resistance to negative regulation by phosphorylation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    2. Yanxiang Meng & Sarah E. Garnish & Katherine A. Davies & Katrina A. Black & Andrew P. Leis & Christopher R. Horne & Joanne M. Hildebrand & Hanadi Hoblos & Cheree Fitzgibbon & Samuel N. Young & Toby Di, 2023. "Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization," Nature Communications, Nature, vol. 14(1), pages 1-18, December.

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