IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-42255-w.html
   My bibliography  Save this article

Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization

Author

Listed:
  • Yanxiang Meng

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Sarah E. Garnish

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Katherine A. Davies

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Katrina A. Black

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Andrew P. Leis

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Christopher R. Horne

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Joanne M. Hildebrand

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Hanadi Hoblos

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Cheree Fitzgibbon

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Samuel N. Young

    (Walter and Eliza Hall Institute of Medical Research)

  • Toby Dite

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Laura F. Dagley

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • Aarya Venkat

    (University of Georgia)

  • Natarajan Kannan

    (University of Georgia
    University of Georgia)

  • Akiko Koide

    (New York University Langone Health
    New York University School of Medicine)

  • Shohei Koide

    (New York University Langone Health
    New York University School of Medicine)

  • Alisa Glukhova

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne
    Monash University
    University of Melbourne)

  • Peter E. Czabotar

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne)

  • James M. Murphy

    (Walter and Eliza Hall Institute of Medical Research
    University of Melbourne
    Monash University)

Abstract

The necroptosis pathway is a lytic, pro-inflammatory mode of cell death that is widely implicated in human disease, including renal, pulmonary, gut and skin inflammatory pathologies. The precise mechanism of the terminal steps in the pathway, where the RIPK3 kinase phosphorylates and triggers a conformation change and oligomerization of the terminal pathway effector, MLKL, are only emerging. Here, we structurally identify RIPK3-mediated phosphorylation of the human MLKL activation loop as a cue for MLKL pseudokinase domain dimerization. MLKL pseudokinase domain dimerization subsequently drives formation of elongated homotetramers. Negative stain electron microscopy and modelling support nucleation of the MLKL tetramer assembly by a central coiled coil formed by the extended, ~80 Å brace helix that connects the pseudokinase and executioner four-helix bundle domains. Mutational data assert MLKL tetramerization as an essential prerequisite step to enable the release and reorganization of four-helix bundle domains for membrane permeabilization and cell death.

Suggested Citation

  • Yanxiang Meng & Sarah E. Garnish & Katherine A. Davies & Katrina A. Black & Andrew P. Leis & Christopher R. Horne & Joanne M. Hildebrand & Hanadi Hoblos & Cheree Fitzgibbon & Samuel N. Young & Toby Di, 2023. "Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42255-w
    DOI: 10.1038/s41467-023-42255-w
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-42255-w
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-42255-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Kim Newton & Katherine E. Wickliffe & Allie Maltzman & Debra L. Dugger & Andreas Strasser & Victoria C. Pham & Jennie R. Lill & Merone Roose-Girma & Søren Warming & Margaret Solon & Hai Ngu & Joshua D, 2016. "RIPK1 inhibits ZBP1-driven necroptosis during development," Nature, Nature, vol. 540(7631), pages 129-133, December.
    2. Katherine A. Davies & Cheree Fitzgibbon & Samuel N. Young & Sarah E. Garnish & Wayland Yeung & Diane Coursier & Richard W. Birkinshaw & Jarrod J. Sandow & Wil I. L. Lehmann & Lung-Yu Liang & Isabelle , 2020. "Distinct pseudokinase domain conformations underlie divergent activation mechanisms among vertebrate MLKL orthologues," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
    3. Emma J. Petrie & Jarrod J. Sandow & Annette V. Jacobsen & Brian J. Smith & Michael D. W. Griffin & Isabelle S. Lucet & Weiwen Dai & Samuel N. Young & Maria C. Tanzer & Ahmad Wardak & Lung-Yu Liang & A, 2018. "Conformational switching of the pseudokinase domain promotes human MLKL tetramerization and cell death by necroptosis," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
    4. Marius Dannappel & Katerina Vlantis & Snehlata Kumari & Apostolos Polykratis & Chun Kim & Laurens Wachsmuth & Christina Eftychi & Juan Lin & Teresa Corona & Nicole Hermance & Matija Zelic & Petra Kirs, 2014. "RIPK1 maintains epithelial homeostasis by inhibiting apoptosis and necroptosis," Nature, Nature, vol. 513(7516), pages 90-94, September.
    5. Yanxiang Meng & Katherine A. Davies & Cheree Fitzgibbon & Samuel N. Young & Sarah E. Garnish & Christopher R. Horne & Cindy Luo & Jean-Marc Garnier & Lung-Yu Liang & Angus D. Cowan & Andre L. Samson &, 2021. "Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    6. Juan Lin & Snehlata Kumari & Chun Kim & Trieu-My Van & Laurens Wachsmuth & Apostolos Polykratis & Manolis Pasparakis, 2016. "RIPK1 counteracts ZBP1-mediated necroptosis to inhibit inflammation," Nature, Nature, vol. 540(7631), pages 124-128, December.
    7. Joanne M. Hildebrand & Maria Kauppi & Ian J. Majewski & Zikou Liu & Allison J. Cox & Sanae Miyake & Emma J. Petrie & Michael A. Silk & Zhixiu Li & Maria C. Tanzer & Gabriela Brumatti & Samuel N. Young, 2020. "A missense mutation in the MLKL brace region promotes lethal neonatal inflammation and hematopoietic dysfunction," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
    8. Andre L. Samson & Ying Zhang & Niall D. Geoghegan & Xavier J. Gavin & Katherine A. Davies & Michael J. Mlodzianoski & Lachlan W. Whitehead & Daniel Frank & Sarah E. Garnish & Cheree Fitzgibbon & Anne , 2020. "MLKL trafficking and accumulation at the plasma membrane control the kinetics and threshold for necroptosis," Nature Communications, Nature, vol. 11(1), pages 1-17, December.
    9. Sarah E. Garnish & Katherine R. Martin & Maria Kauppi & Victoria E. Jackson & Rebecca Ambrose & Vik Ven Eng & Shene Chiou & Yanxiang Meng & Daniel Frank & Emma C. Tovey Crutchfield & Komal M. Patel & , 2023. "A common human MLKL polymorphism confers resistance to negative regulation by phosphorylation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    10. Sarah E. Garnish & Yanxiang Meng & Akiko Koide & Jarrod J. Sandow & Eric Denbaum & Annette V. Jacobsen & Wayland Yeung & Andre L. Samson & Christopher R. Horne & Cheree Fitzgibbon & Samuel N. Young & , 2021. "Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Sarah E. Garnish & Katherine R. Martin & Maria Kauppi & Victoria E. Jackson & Rebecca Ambrose & Vik Ven Eng & Shene Chiou & Yanxiang Meng & Daniel Frank & Emma C. Tovey Crutchfield & Komal M. Patel & , 2023. "A common human MLKL polymorphism confers resistance to negative regulation by phosphorylation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    2. Yanxiang Meng & Katherine A. Davies & Cheree Fitzgibbon & Samuel N. Young & Sarah E. Garnish & Christopher R. Horne & Cindy Luo & Jean-Marc Garnier & Lung-Yu Liang & Angus D. Cowan & Andre L. Samson &, 2021. "Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    3. Chao-Yu Yang & Yi-Chun Tseng & Yi-Fan Tu & Bai-Jiun Kuo & Li-Chung Hsu & Chia-I Lien & You-Sheng Lin & Yin-Ting Wang & Yen-Chen Lu & Tsung-Wei Su & Yu-Chih Lo & Su-Chang Lin, 2024. "Reverse hierarchical DED assembly in the cFLIP-procaspase-8 and cFLIP-procaspase-8-FADD complexes," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    4. Christoph Grohmann & Charlene M. Magtoto & Joel R. Walker & Ngee Kiat Chua & Anna Gabrielyan & Mary Hall & Simon A. Cobbold & Stephen Mieruszynski & Martin Brzozowski & Daniel S. Simpson & Hao Dong & , 2022. "Development of NanoLuc-targeting protein degraders and a universal reporter system to benchmark tag-targeted degradation platforms," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    5. Hannah Schünke & Ulrike Göbel & Ivan Dikic & Manolis Pasparakis, 2021. "OTULIN inhibits RIPK1-mediated keratinocyte necroptosis to prevent skin inflammation in mice," Nature Communications, Nature, vol. 12(1), pages 1-15, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42255-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.