Two complementary genes in a presence-absence variation contribute to indica-japonica reproductive isolation in rice
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DOI: 10.1038/s41467-023-40189-x
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- Hongbo Li & Shenhao Wang & Sen Chai & Zhiquan Yang & Qiqi Zhang & Hongjia Xin & Yuanchao Xu & Shengnan Lin & Xinxiu Chen & Zhiwang Yao & Qingyong Yang & Zhangjun Fei & Sanwen Huang & Zhonghua Zhang, 2022. "Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Yoko Hattori & Keisuke Nagai & Shizuka Furukawa & Xian-Jun Song & Ritsuko Kawano & Hitoshi Sakakibara & Jianzhong Wu & Takashi Matsumoto & Atsushi Yoshimura & Hidemi Kitano & Makoto Matsuoka & Hitoshi, 2009. "The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water," Nature, Nature, vol. 460(7258), pages 1026-1030, August.
- Wensheng Wang & Ramil Mauleon & Zhiqiang Hu & Dmytro Chebotarov & Shuaishuai Tai & Zhichao Wu & Min Li & Tianqing Zheng & Roven Rommel Fuentes & Fan Zhang & Locedie Mansueto & Dario Copetti & Millicen, 2018. "Genomic variation in 3,010 diverse accessions of Asian cultivated rice," Nature, Nature, vol. 557(7703), pages 43-49, May.
- Susan R. McCouch & Mark H. Wright & Chih-Wei Tung & Lyza G. Maron & Kenneth L. McNally & Melissa Fitzgerald & Namrata Singh & Genevieve DeClerck & Francisco Agosto Perez & Pavel Korniliev & Anthony J., 2016. "Correction: Corrigendum: Open access resources for genome-wide association mapping in rice," Nature Communications, Nature, vol. 7(1), pages 1-1, September.
- Rico Gamuyao & Joong Hyoun Chin & Juan Pariasca-Tanaka & Paolo Pesaresi & Sheryl Catausan & Cheryl Dalid & Inez Slamet-Loedin & Evelyn Mae Tecson-Mendoza & Matthias Wissuwa & Sigrid Heuer, 2012. "The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency," Nature, Nature, vol. 488(7412), pages 535-539, August.
- Xuehui Huang & Nori Kurata & Xinghua Wei & Zi-Xuan Wang & Ahong Wang & Qiang Zhao & Yan Zhao & Kunyan Liu & Hengyun Lu & Wenjun Li & Yunli Guo & Yiqi Lu & Congcong Zhou & Danlin Fan & Qijun Weng & Chu, 2012. "A map of rice genome variation reveals the origin of cultivated rice," Nature, Nature, vol. 490(7421), pages 497-501, October.
- Agnieszka A. Golicz & Philipp E. Bayer & Guy C. Barker & Patrick P. Edger & HyeRan Kim & Paula A. Martinez & Chon Kit Kenneth Chan & Anita Severn-Ellis & W. Richard McCombie & Isobel A. P. Parkin & An, 2016. "The pangenome of an agronomically important crop plant Brassica oleracea," Nature Communications, Nature, vol. 7(1), pages 1-8, December.
- Kenong Xu & Xia Xu & Takeshi Fukao & Patrick Canlas & Reycel Maghirang-Rodriguez & Sigrid Heuer & Abdelbagi M. Ismail & Julia Bailey-Serres & Pamela C. Ronald & David J. Mackill, 2006. "Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice," Nature, Nature, vol. 442(7103), pages 705-708, August.
- Yongyao Xie & Jintao Tang & Xianrong Xie & Xiaojuan Li & Jianle Huang & Yue Fei & Jingluan Han & Shuifu Chen & Huiwu Tang & Xiucai Zhao & Dayun Tao & Peng Xu & Yao-Guang Liu & Letian Chen, 2019. "An asymmetric allelic interaction drives allele transmission bias in interspecific rice hybrids," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
- Susan R. McCouch & Mark H. Wright & Chih-Wei Tung & Lyza G. Maron & Kenneth L. McNally & Melissa Fitzgerald & Namrata Singh & Genevieve DeClerck & Francisco Agosto-Perez & Pavel Korniliev & Anthony J., 2016. "Open access resources for genome-wide association mapping in rice," Nature Communications, Nature, vol. 7(1), pages 1-14, April.
- Rongxin Shen & Lan Wang & Xupeng Liu & Jiang Wu & Weiwei Jin & Xiucai Zhao & Xianrong Xie & Qinlong Zhu & Huiwu Tang & Qing Li & Letian Chen & Yao-Guang Liu, 2017. "Genomic structural variation-mediated allelic suppression causes hybrid male sterility in rice," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
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