IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-38085-5.html
   My bibliography  Save this article

UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination

Author

Listed:
  • Yongqi He

    (South China Agricultural University)

  • Shan Sun

    (South China Agricultural University)

  • Jia Zhao

    (South China Agricultural University)

  • Zhibo Huang

    (South China Agricultural University)

  • Liling Peng

    (South China Agricultural University)

  • Chengwei Huang

    (South China Agricultural University)

  • Zhengbin Tang

    (South China Agricultural University)

  • Qianqian Huang

    (South China Agricultural University)

  • Zhoufei Wang

    (South China Agricultural University)

Abstract

Submergence stress represents a major obstacle limiting the application of direct seeding in rice cultivation. Under flooding conditions, coleoptile elongation can function as an escape strategy that contributes to submergence tolerance during seed germination in rice; however, the underlying molecular bases have yet to be fully determined. Herein, we report that natural variation of rice coleoptile length subjected to submergence is determined by the glucosyltransferase encoding gene OsUGT75A. OsUGT75A regulates coleoptile length via decreasing free abscisic acid (ABA) and jasmonic acid (JA) levels by promoting glycosylation of these two phytohormones under submergence. Moreover, we find that OsUGT75A accelerates coleoptile length through mediating the interactions between JASMONATE ZIMDOMAIN (OsJAZ) and ABSCISIC ACID-INSENSITIVE (OsABI) proteins. Last, we reveal the origin of the haplotype that contributes to coleoptile length in response to submergence and transferring this haplotype to indica rice can enhance coleoptile length in submergence conditions. Thus, we propose that OsUGT75A is a useful target in breeding of rice varieties suitable for direct seeding cultivation.

Suggested Citation

  • Yongqi He & Shan Sun & Jia Zhao & Zhibo Huang & Liling Peng & Chengwei Huang & Zhengbin Tang & Qianqian Huang & Zhoufei Wang, 2023. "UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38085-5
    DOI: 10.1038/s41467-023-38085-5
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-38085-5
    File Function: Abstract
    Download Restriction: no
    File URL: https://libkey.io/10.1038/s41467-023-38085-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Kenong Xu & Xia Xu & Takeshi Fukao & Patrick Canlas & Reycel Maghirang-Rodriguez & Sigrid Heuer & Abdelbagi M. Ismail & Julia Bailey-Serres & Pamela C. Ronald & David J. Mackill, 2006. "Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice," Nature, Nature, vol. 442(7103), pages 705-708, August.
    2. Shiyong Sun & Tao Wang & Linlin Wang & Xiaoming Li & Yancui Jia & Chang Liu & Xuehui Huang & Weibo Xie & Xuelu Wang, 2018. "Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
    3. Wanneng Yang & Zilong Guo & Chenglong Huang & Lingfeng Duan & Guoxing Chen & Ni Jiang & Wei Fang & Hui Feng & Weibo Xie & Xingming Lian & Gongwei Wang & Qingming Luo & Qifa Zhang & Qian Liu & Lizhong , 2014. "Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice," Nature Communications, Nature, vol. 5(1), pages 1-9, December.
    4. Xuehui Huang & Nori Kurata & Xinghua Wei & Zi-Xuan Wang & Ahong Wang & Qiang Zhao & Yan Zhao & Kunyan Liu & Hengyun Lu & Wenjun Li & Yunli Guo & Yiqi Lu & Congcong Zhou & Danlin Fan & Qijun Weng & Chu, 2012. "A map of rice genome variation reveals the origin of cultivated rice," Nature, Nature, vol. 490(7421), pages 497-501, October.
    5. Keyan Zhao & Chih-Wei Tung & Georgia C. Eizenga & Mark H. Wright & M. Liakat Ali & Adam H. Price & Gareth J. Norton & M. Rafiqul Islam & Andy Reynolds & Jason Mezey & Anna M. McClung & Carlos D. Busta, 2011. "Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa," Nature Communications, Nature, vol. 2(1), pages 1-10, September.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Daiqi Wang & Hongru Wang & Xiaomei Xu & Man Wang & Yahuan Wang & Hong Chen & Fei Ping & Huanhuan Zhong & Zhengkun Mu & Wantong Xie & Xiangyu Li & Jingbin Feng & Milan Zhang & Zhilan Fan & Tifeng Yang , 2023. "Two complementary genes in a presence-absence variation contribute to indica-japonica reproductive isolation in rice," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    2. Hifzur RAHMAN & Vijayalakshmi DAKSHINAMURTHI & Sasikala RAMASAMY & Sudha MANICKAM & Ashok Kumar KALIYAPERUMAL & Suchismita RAHA & Naresh PANNEERSELVAM & Valarmathi RAMANATHAN & Jagadeeshselvam NALLATH, 2018. "Introgression of submergence tolerance into CO 43, a popular rice variety of India, through marker-assisted backcross breeding," Czech Journal of Genetics and Plant Breeding, Czech Academy of Agricultural Sciences, vol. 54(3), pages 101-108.
    3. Alejandro del Pozo & Nidia Brunel-Saldias & Alejandra Engler & Samuel Ortega-Farias & Cesar Acevedo-Opazo & Gustavo A. Lobos & Roberto Jara-Rojas & Marco A. Molina-Montenegro, 2019. "Climate Change Impacts and Adaptation Strategies of Agriculture in Mediterranean-Climate Regions (MCRs)," Sustainability, MDPI, vol. 11(10), pages 1-16, May.
    4. Seung Young Lee & Hyun-Sook Lee & Chang-Min Lee & Su-Kyung Ha & Hyang-Mi Park & So-Myeong Lee & Youngho Kwon & Ji-Ung Jeung & Youngjun Mo, 2023. "Multi-Environment Trials and Stability Analysis for Yield-Related Traits of Commercial Rice Cultivars," Agriculture, MDPI, vol. 13(2), pages 1-13, January.
    5. Xiaofeng Cai & Xuepeng Sun & Chenxi Xu & Honghe Sun & Xiaoli Wang & Chenhui Ge & Zhonghua Zhang & Quanxi Wang & Zhangjun Fei & Chen Jiao & Quanhua Wang, 2021. "Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    6. San Mar Lar & Jeonghwan Seo & Seong-Gyu Jang & Hongjia Zhang & Ah-Rim Lee & Fang-Yuan Cao & Ja-Hong Lee & Na-Eun Kim & Yoonjung Lee & Yong-Jin Park & Joohyun Lee & Soon-Wook Kwon, 2021. "Genome-Wide Association Study for Detecting Salt-Tolerance Loci and Candidate Genes in Rice," Agriculture, MDPI, vol. 11(11), pages 1-17, November.
    7. Chew, Soo Hong & Ebstein, Richard P. & Lu, Yunfeng, 2023. "Rice culture and the cushion hypothesis: Experimental evidence from incentivized risk taking tasks," Economics Letters, Elsevier, vol. 223(C).
    8. Mariola Staniak & Ewa Szpunar-Krok & Anna Kocira, 2023. "Responses of Soybean to Selected Abiotic Stresses—Photoperiod, Temperature and Water," Agriculture, MDPI, vol. 13(1), pages 1-28, January.
    9. Rujia Chen & Ning Xiao & Yue Lu & Tianyun Tao & Qianfeng Huang & Shuting Wang & Zhichao Wang & Mingli Chuan & Qing Bu & Zhou Lu & Hanyao Wang & Yanze Su & Yi Ji & Jianheng Ding & Ahmed Gharib & Huixin, 2023. "A de novo evolved gene contributes to rice grain shape difference between indica and japonica," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    10. Taikui Zhang & Weichen Huang & Lin Zhang & De-Zhu Li & Ji Qi & Hong Ma, 2024. "Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages," Nature Communications, Nature, vol. 15(1), pages 1-27, December.
    11. Dawei Li & Zedong Geng & Shixuan Xia & Hui Feng & Xiuhan Jiang & Hui Du & Pei Wang & Qun Lian & Yanhui Zhu & Yuxin Jia & Yao Zhou & Yaoyao Wu & Chenglong Huang & Guangtao Zhu & Yi Shang & Huihui Li & , 2024. "Integrative multi-omics analysis reveals genetic and heterotic contributions to male fertility and yield in potato," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    12. Zihao Wang & Wenxi Wang & Xiaoming Xie & Yongfa Wang & Zhengzhao Yang & Huiru Peng & Mingming Xin & Yingyin Yao & Zhaorong Hu & Jie Liu & Zhenqi Su & Chaojie Xie & Baoyun Li & Zhongfu Ni & Qixin Sun &, 2022. "Dispersed emergence and protracted domestication of polyploid wheat uncovered by mosaic ancestral haploblock inference," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    13. Elisa Zampieri & Michele Pesenti & Fabio Francesco Nocito & Gian Attilio Sacchi & Giampiero Valè, 2023. "Rice Responses to Water Limiting Conditions: Improving Stress Management by Exploiting Genetics and Physiological Processes," Agriculture, MDPI, vol. 13(2), pages 1-23, February.
    14. Yajun Gou & Yueqin Heng & Wenyan Ding & Canhong Xu & Qiushuang Tan & Yajing Li & Yudong Fang & Xiaoqing Li & Degui Zhou & Xinyu Zhu & Mingyue Zhang & Rongjian Ye & Haiyang Wang & Rongxin Shen, 2024. "Natural variation in OsMYB8 confers diurnal floret opening time divergence between indica and japonica subspecies," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    15. Bin Yang & Jiali Zeng & Shaona Chen & Shengyu Li & Longmei Wu & Xiaorong Wan, 2022. "Genome-Wide Association Study Reveals the Genetic Basis of Seed Germination in Japonica Rice," Agriculture, MDPI, vol. 13(1), pages 1-14, December.
    16. Decha Songtoasesakul & Wanchana Aesomnuk & Sarinthip Pannak & Jonaliza Lanceras Siangliw & Meechai Siangliw & Theerayut Toojinda & Samart Wanchana & Siwaret Arikit, 2023. "QTL-seq Identifies Pokkali-Derived QTLs and Candidate Genes for Salt Tolerance at Seedling Stage in Rice ( Oryza sativa L.)," Agriculture, MDPI, vol. 13(8), pages 1-15, August.
    17. Kyle Emerick & Alain de Janvry & Elisabeth Sadoulet & Manzoor H. Dar, 2016. "Technological Innovations, Downside Risk, and the Modernization of Agriculture," American Economic Review, American Economic Association, vol. 106(6), pages 1537-1561, June.
    18. Emerick, Kyle, 2018. "Trading frictions in Indian village economies," Journal of Development Economics, Elsevier, vol. 132(C), pages 32-56.
    19. Scutari Marco & Mackay Ian & Balding David, 2013. "Improving the efficiency of genomic selection," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(4), pages 517-527, August.
    20. Emerick, Kyle & De Janvry, Alain & Sadoulet, Elisabeth & Dar, Manzoor & Wiseman, Eleanor, 2020. "Private Input Suppliers as Information Agents for Technology Adoption in Agriculture," CEPR Discussion Papers 15584, C.E.P.R. Discussion Papers.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38085-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.