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Natural variation of DROT1 confers drought adaptation in upland rice

Author

Listed:
  • Xingming Sun

    (China Agricultural University
    China Agricultural University)

  • Haiyan Xiong

    (China Agricultural University
    Huazhong Agricultural University)

  • Conghui Jiang

    (China Agricultural University)

  • Dongmei Zhang

    (Chinese Academy of Sciences)

  • Zengling Yang

    (China Agricultural University)

  • Yuanping Huang

    (China Agricultural University)

  • Wanbin Zhu

    (China Agricultural University
    Sanya Institute of China Agricultural University)

  • Shuaishuai Ma

    (China Agricultural University)

  • Junzhi Duan

    (China Agricultural University)

  • Xin Wang

    (China Agricultural University)

  • Wei Liu

    (China Agricultural University
    Sanya Institute of China Agricultural University)

  • Haifeng Guo

    (China Agricultural University)

  • Gangling Li

    (China Agricultural University)

  • Jiawei Qi

    (China Agricultural University)

  • Chaobo Liang

    (China Agricultural University)

  • Zhanying Zhang

    (China Agricultural University)

  • Jinjie Li

    (China Agricultural University)

  • Hongliang Zhang

    (China Agricultural University)

  • Lujia Han

    (China Agricultural University)

  • Yihua Zhou

    (Chinese Academy of Sciences)

  • Youliang Peng

    (China Agricultural University)

  • Zichao Li

    (China Agricultural University
    Sanya Institute of China Agricultural University)

Abstract

Upland rice is a distinct ecotype that grows in aerobic environments and tolerates drought stress. However, the genetic basis of its drought resistance is unclear. Here, using an integrative approach combining a genome-wide association study with analyses of introgression lines and transcriptomic profiles, we identify a gene, DROUGHT1 (DROT1), encoding a COBRA-like protein that confers drought resistance in rice. DROT1 is specifically expressed in vascular bundles and is directly repressed by ERF3 and activated by ERF71, both drought-responsive transcription factors. DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity. A C-to-T single-nucleotide variation in the promoter increases DROT1 expression and drought resistance in upland rice. The potential elite haplotype of DROT1 in upland rice could originate in wild rice (O. rufipogon) and may be beneficial for breeding upland rice varieties.

Suggested Citation

  • Xingming Sun & Haiyan Xiong & Conghui Jiang & Dongmei Zhang & Zengling Yang & Yuanping Huang & Wanbin Zhu & Shuaishuai Ma & Junzhi Duan & Xin Wang & Wei Liu & Haifeng Guo & Gangling Li & Jiawei Qi & C, 2022. "Natural variation of DROT1 confers drought adaptation in upland rice," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31844-w
    DOI: 10.1038/s41467-022-31844-w
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    1. Tao Zhu & Chunjiao Xia & Ranran Yu & Xinkai Zhou & Xingbing Xu & Lin Wang & Zhanxiang Zong & Junjiao Yang & Yinmeng Liu & Luchang Ming & Yuxin You & Dijun Chen & Weibo Xie, 2024. "Comprehensive mapping and modelling of the rice regulome landscape unveils the regulatory architecture underlying complex traits," Nature Communications, Nature, vol. 15(1), pages 1-17, December.

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