IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v7y2016i1d10.1038_ncomms10532.html
   My bibliography  Save this article

Open access resources for genome-wide association mapping in rice

Author

Listed:
  • Susan R. McCouch

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Cornell University)

  • Mark H. Wright

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Present address: Department of Genetics, Stanford School of Medicine, Stanford, California 94305, USA)

  • Chih-Wei Tung

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Present address: Department of Agronomy, National Taiwan University, 106 Taipei, Taiwan)

  • Lyza G. Maron

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University)

  • Kenneth L. McNally

    (International Rice Research Institute)

  • Melissa Fitzgerald

    (International Rice Research Institute
    School of Food Science, University of Queensland)

  • Namrata Singh

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University)

  • Genevieve DeClerck

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University)

  • Francisco Agosto-Perez

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Cornell University)

  • Pavel Korniliev

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Cornell University)

  • Anthony J. Greenberg

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Cornell University)

  • Ma. Elizabeth B. Naredo

    (International Rice Research Institute)

  • Sheila Mae Q. Mercado

    (International Rice Research Institute)

  • Sandra E. Harrington

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University)

  • Yuxin Shi

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University)

  • Darcy A. Branchini

    (Transnational Learning Center, Cornell University
    Present address: Mann Library, Cornell University, Ithaca, New York 14850, USA)

  • Paula R. Kuser-Falcão

    (School of Integrative Plant Sciences, Plant Breeding and Genetics section, Cornell University
    Present address: Embrapa Agriculture Informatics, 13083-886 Campinas, Brazil.)

  • Hei Leung

    (International Rice Research Institute)

  • Kowaru Ebana

    (National Institute of Agrobiological Sciences)

  • Masahiro Yano

    (National Institute of Agrobiological Sciences)

  • Georgia Eizenga

    (USDA–ARS Dale Bumpers National Rice Research Center)

  • Anna McClung

    (USDA–ARS Dale Bumpers National Rice Research Center)

  • Jason Mezey

    (Cornell University)

Abstract

Increasing food production is essential to meet the demands of a growing human population, with its rising income levels and nutritional expectations. To address the demand, plant breeders seek new sources of genetic variation to enhance the productivity, sustainability and resilience of crop varieties. Here we launch a high-resolution, open-access research platform to facilitate genome-wide association mapping in rice, a staple food crop. The platform provides an immortal collection of diverse germplasm, a high-density single-nucleotide polymorphism data set tailored for gene discovery, well-documented analytical strategies, and a suite of bioinformatics resources to facilitate biological interpretation. Using grain length, we demonstrate the power and resolution of our new high-density rice array, the accompanying genotypic data set, and an expanded diversity panel for detecting major and minor effect QTLs and subpopulation-specific alleles, with immediate implications for rice improvement.

Suggested Citation

  • Susan R. McCouch & Mark H. Wright & Chih-Wei Tung & Lyza G. Maron & Kenneth L. McNally & Melissa Fitzgerald & Namrata Singh & Genevieve DeClerck & Francisco Agosto-Perez & Pavel Korniliev & Anthony J., 2016. "Open access resources for genome-wide association mapping in rice," Nature Communications, Nature, vol. 7(1), pages 1-14, April.
    • Handle: RePEc:nat:natcom:v:7:y:2016:i:1:d:10.1038_ncomms10532
    DOI: 10.1038/ncomms10532
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/ncomms10532
    File Function: Abstract
    Download Restriction: no
    File URL: https://libkey.io/10.1038/ncomms10532?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Daiqi Wang & Hongru Wang & Xiaomei Xu & Man Wang & Yahuan Wang & Hong Chen & Fei Ping & Huanhuan Zhong & Zhengkun Mu & Wantong Xie & Xiangyu Li & Jingbin Feng & Milan Zhang & Zhilan Fan & Tifeng Yang , 2023. "Two complementary genes in a presence-absence variation contribute to indica-japonica reproductive isolation in rice," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    2. Xiaomin Wang & Rui Cheng & Daochao Xu & Renliang Huang & Haoxing Li & Liang Jin & Yufeng Wu & Jiuyou Tang & Changhui Sun & Deliang Peng & Chengcai Chu & Xiaoli Guo, 2023. "MG1 interacts with a protease inhibitor and confers resistance to rice root-knot nematode," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    3. Pin Su & Houxiang Kang & Qianze Peng & Wisnu Adi Wicaksono & Gabriele Berg & Zhuoxin Liu & Jiejia Ma & Deyong Zhang & Tomislav Cernava & Yong Liu, 2024. "Microbiome homeostasis on rice leaves is regulated by a precursor molecule of lignin biosynthesis," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    4. Ni Luh Suriani & Dewa Ngurah Suprapta & Novizar Nazir & Ni Made Susun Parwanayoni & Anak Agung Ketut Darmadi & Desy Andya Dewi & Ni Wayan Sudatri & Ahmad Fudholi & R. Z. Sayyed & Asad Syed & Abdallah , 2020. "A Mixture of Piper Leaves Extracts and Rhizobacteria for Sustainable Plant Growth Promotion and Bio-Control of Blast Pathogen of Organic Bali Rice," Sustainability, MDPI, vol. 12(20), pages 1-18, October.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:7:y:2016:i:1:d:10.1038_ncomms10532. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.