Mapping diversity in African trypanosomes using high resolution spatial proteomics
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-023-40125-z
Download full text from publisher
References listed on IDEAS
- Oliver M Crook & Claire M Mulvey & Paul D W Kirk & Kathryn S Lilley & Laurent Gatto, 2018. "A Bayesian mixture modelling approach for spatial proteomics," PLOS Computational Biology, Public Library of Science, vol. 14(11), pages 1-29, November.
- Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
- Christian D. Peikert & Jan Mani & Marcel Morgenstern & Sandro Käser & Bettina Knapp & Christoph Wenger & Anke Harsman & Silke Oeljeklaus & André Schneider & Bettina Warscheid, 2017. "Charting organellar importomes by quantitative mass spectrometry," Nature Communications, Nature, vol. 8(1), pages 1-14, August.
- Oliver M Crook & Aikaterini Geladaki & Daniel J H Nightingale & Owen L Vennard & Kathryn S Lilley & Laurent Gatto & Paul D W Kirk, 2020. "A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection," PLOS Computational Biology, Public Library of Science, vol. 16(11), pages 1-21, November.
- Aikaterini Geladaki & Nina Kočevar Britovšek & Lisa M. Breckels & Tom S. Smith & Owen L. Vennard & Claire M. Mulvey & Oliver M. Crook & Laurent Gatto & Kathryn S. Lilley, 2019. "Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
- Lan Huong Nguyen & Susan Holmes, 2019. "Ten quick tips for effective dimensionality reduction," PLOS Computational Biology, Public Library of Science, vol. 15(6), pages 1-19, June.
- John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
- Won-Ki Huh & James V. Falvo & Luke C. Gerke & Adam S. Carroll & Russell W. Howson & Jonathan S. Weissman & Erin K. O'Shea, 2003. "Global analysis of protein localization in budding yeast," Nature, Nature, vol. 425(6959), pages 686-691, October.
- Andy Christoforou & Claire M. Mulvey & Lisa M. Breckels & Aikaterini Geladaki & Tracey Hurrell & Penelope C. Hayward & Thomas Naake & Laurent Gatto & Rosa Viner & Alfonso Martinez Arias & Kathryn S. L, 2016. "A draft map of the mouse pluripotent stem cell spatial proteome," Nature Communications, Nature, vol. 7(1), pages 1-12, April.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Mathieu Cayla & Christos Spanos & Kirsty McWilliam & Eliza Waskett & Juri Rappsilber & Keith R. Matthews, 2024. "Differentiation granules, a dynamic regulator of T. brucei development," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Oliver M Crook & Aikaterini Geladaki & Daniel J H Nightingale & Owen L Vennard & Kathryn S Lilley & Laurent Gatto & Paul D W Kirk, 2020. "A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection," PLOS Computational Biology, Public Library of Science, vol. 16(11), pages 1-21, November.
- Oliver M. Crook & Colin T. R. Davies & Lisa M. Breckels & Josie A. Christopher & Laurent Gatto & Paul D. W. Kirk & Kathryn S. Lilley, 2022. "Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE," Nature Communications, Nature, vol. 13(1), pages 1-21, December.
- Yudong Gao & Daichi Shonai & Matthew Trn & Jieqing Zhao & Erik J. Soderblom & S. Alexandra Garcia-Moreno & Charles A. Gersbach & William C. Wetsel & Geraldine Dawson & Dmitry Velmeshev & Yong-hui Jian, 2024. "Proximity analysis of native proteomes reveals phenotypic modifiers in a mouse model of autism and related neurodevelopmental conditions," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Jordan Currie & Vyshnavi Manda & Sean K. Robinson & Celine Lai & Vertica Agnihotri & Veronica Hidalgo & R. W. Ludwig & Kai Zhang & Jay Pavelka & Zhao V. Wang & June-Wha Rhee & Maggie P. Y. Lam & Edwar, 2024. "Simultaneous proteome localization and turnover analysis reveals spatiotemporal features of protein homeostasis disruptions," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Ying Zhu & Kerem Can Akkaya & Julia Ruta & Nanako Yokoyama & Cong Wang & Max Ruwolt & Diogo Borges Lima & Martin Lehmann & Fan Liu, 2024. "Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Ana Martinez-Val & Dorte B. Bekker-Jensen & Sophia Steigerwald & Claire Koenig & Ole Østergaard & Adi Mehta & Trung Tran & Krzysztof Sikorski & Estefanía Torres-Vega & Ewa Kwasniewicz & Sólveig Hlín B, 2021. "Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
- Ye Yuan & Lei Chen & Kexu Song & Miaomiao Cheng & Ling Fang & Lingfei Kong & Lanlan Yu & Ruonan Wang & Zhendong Fu & Minmin Sun & Qian Wang & Chengjun Cui & Haojue Wang & Jiuyang He & Xiaonan Wang & Y, 2024. "Stable peptide-assembled nanozyme mimicking dual antifungal actions," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Miriam Aparicio, 2021. "Resiliency and Cooperation or Regarding Social and Collective Competencies for University Achievement. An Analysis from a Systemic Perspective," European Journal of Social Sciences Education and Research Articles, Revistia Research and Publishing, vol. 8, ejser_v8_.
- Yunpeng Zhao & Qing Pan & Chengan Du, 2019. "Logistic regression augmented community detection for network data with application in identifying autism‐related gene pathways," Biometrics, The International Biometric Society, vol. 75(1), pages 222-234, March.
- Ivica Odorčić & Mohamed Belal Hamed & Sam Lismont & Lucía Chávez-Gutiérrez & Rouslan G. Efremov, 2024. "Apo and Aβ46-bound γ-secretase structures provide insights into amyloid-β processing by the APH-1B isoform," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Léon Faure & Bastien Mollet & Wolfram Liebermeister & Jean-Loup Faulon, 2023. "A neural-mechanistic hybrid approach improving the predictive power of genome-scale metabolic models," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Wu, Han-Ming & Tien, Yin-Jing & Chen, Chun-houh, 2010. "GAP: A graphical environment for matrix visualization and cluster analysis," Computational Statistics & Data Analysis, Elsevier, vol. 54(3), pages 767-778, March.
- José E. Chacón, 2021. "Explicit Agreement Extremes for a 2 × 2 Table with Given Marginals," Journal of Classification, Springer;The Classification Society, vol. 38(2), pages 257-263, July.
- F. Marta L. Di Lascio & Andrea Menapace & Roberta Pappadà, 2024. "A spatially‐weighted AMH copula‐based dissimilarity measure for clustering variables: An application to urban thermal efficiency," Environmetrics, John Wiley & Sons, Ltd., vol. 35(1), February.
- Tian Zhu & Merry H. Ma, 2022. "Deriving the Optimal Strategy for the Two Dice Pig Game via Reinforcement Learning," Stats, MDPI, vol. 5(3), pages 1-14, August.
- Yifan Zhu & Chongzhi Di & Ying Qing Chen, 2019. "Clustering Functional Data with Application to Electronic Medication Adherence Monitoring in HIV Prevention Trials," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 11(2), pages 238-261, July.
- Irene Vrbik & Paul McNicholas, 2015. "Fractionally-Supervised Classification," Journal of Classification, Springer;The Classification Society, vol. 32(3), pages 359-381, October.
- Maurizio Vichi & Carlo Cavicchia & Patrick J. F. Groenen, 2022. "Hierarchical Means Clustering," Journal of Classification, Springer;The Classification Society, vol. 39(3), pages 553-577, November.
- Batool, Fatima & Hennig, Christian, 2021. "Clustering with the Average Silhouette Width," Computational Statistics & Data Analysis, Elsevier, vol. 158(C).
- Stella Vitt & Simone Prinz & Martin Eisinger & Ulrich Ermler & Wolfgang Buckel, 2022. "Purification and structural characterization of the Na+-translocating ferredoxin: NAD+ reductase (Rnf) complex of Clostridium tetanomorphum," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40125-z. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.