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A G358S mutation in the Plasmodium falciparum Na+ pump PfATP4 confers clinically-relevant resistance to cipargamin

Author

Listed:
  • Deyun Qiu

    (Australian National University)

  • Jinxin V. Pei

    (Australian National University)

  • James E. O. Rosling

    (Australian National University)

  • Vandana Thathy

    (Columbia University Irving Medical Center)

  • Dongdi Li

    (Australian National University)

  • Yi Xue

    (Australian National University)

  • John D. Tanner

    (Australian National University)

  • Jocelyn Sietsma Penington

    (The Walter & Eliza Hall Institute of Medical Research)

  • Yi Tong Vincent Aw

    (Australian National University)

  • Jessica Yi Han Aw

    (Australian National University)

  • Guoyue Xu

    (Johns Hopkins School of Public Health)

  • Abhai K. Tripathi

    (Johns Hopkins School of Public Health)

  • Nina F. Gnadig

    (Columbia University Irving Medical Center)

  • Tomas Yeo

    (Columbia University Irving Medical Center)

  • Kate J. Fairhurst

    (Columbia University Irving Medical Center)

  • Barbara H. Stokes

    (Columbia University Irving Medical Center)

  • James M. Murithi

    (Columbia University Irving Medical Center)

  • Krittikorn Kümpornsin

    (Wellcome Genome Campus)

  • Heath Hasemer

    (Australian National University)

  • Adelaide S. M. Dennis

    (Australian National University)

  • Melanie C. Ridgway

    (Australian National University)

  • Esther K. Schmitt

    (Novartis Pharma AG, Novartis Campus)

  • Judith Straimer

    (Novartis Institute for Tropical Diseases)

  • Anthony T. Papenfuss

    (The Walter & Eliza Hall Institute of Medical Research
    The University of Melbourne)

  • Marcus C. S. Lee

    (Wellcome Genome Campus)

  • Ben Corry

    (Australian National University)

  • Photini Sinnis

    (Johns Hopkins School of Public Health)

  • David A. Fidock

    (Columbia University Irving Medical Center
    Columbia University Irving Medical Center)

  • Giel G. Dooren

    (Australian National University)

  • Kiaran Kirk

    (Australian National University)

  • Adele M. Lehane

    (Australian National University)

Abstract

Diverse compounds target the Plasmodium falciparum Na+ pump PfATP4, with cipargamin and (+)-SJ733 the most clinically-advanced. In a recent clinical trial for cipargamin, recrudescent parasites emerged, with most having a G358S mutation in PfATP4. Here, we show that PfATP4G358S parasites can withstand micromolar concentrations of cipargamin and (+)-SJ733, while remaining susceptible to antimalarials that do not target PfATP4. The G358S mutation in PfATP4, and the equivalent mutation in Toxoplasma gondii ATP4, decrease the sensitivity of ATP4 to inhibition by cipargamin and (+)-SJ733, thereby protecting parasites from disruption of Na+ regulation. The G358S mutation reduces the affinity of PfATP4 for Na+ and is associated with an increase in the parasite’s resting cytosolic [Na+]. However, no defect in parasite growth or transmissibility is observed. Our findings suggest that PfATP4 inhibitors in clinical development should be tested against PfATP4G358S parasites, and that their combination with unrelated antimalarials may mitigate against resistance development.

Suggested Citation

  • Deyun Qiu & Jinxin V. Pei & James E. O. Rosling & Vandana Thathy & Dongdi Li & Yi Xue & John D. Tanner & Jocelyn Sietsma Penington & Yi Tong Vincent Aw & Jessica Yi Han Aw & Guoyue Xu & Abhai K. Tripa, 2022. "A G358S mutation in the Plasmodium falciparum Na+ pump PfATP4 confers clinically-relevant resistance to cipargamin," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33403-9
    DOI: 10.1038/s41467-022-33403-9
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    1. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    2. Suresh M. Ganesan & Alejandra Falla & Stephen J. Goldfless & Armiyaw S. Nasamu & Jacquin C. Niles, 2016. "Synthetic RNA–protein modules integrated with native translation mechanisms to control gene expression in malaria parasites," Nature Communications, Nature, vol. 7(1), pages 1-10, April.
    3. W. Armand Guiguemde & Anang A. Shelat & David Bouck & Sandra Duffy & Gregory J. Crowther & Paul H. Davis & David C. Smithson & Michele Connelly & Julie Clark & Fangyi Zhu & María B. Jiménez-Díaz & Mar, 2010. "Chemical genetics of Plasmodium falciparum," Nature, Nature, vol. 465(7296), pages 311-315, May.
    4. Francisco-Javier Gamo & Laura M. Sanz & Jaume Vidal & Cristina de Cozar & Emilio Alvarez & Jose-Luis Lavandera & Dana E. Vanderwall & Darren V. S. Green & Vinod Kumar & Samiul Hasan & James R. Brown &, 2010. "Thousands of chemical starting points for antimalarial lead identification," Nature, Nature, vol. 465(7296), pages 305-310, May.
    5. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    6. Akhil B. Vaidya & Joanne M. Morrisey & Zhongsheng Zhang & Sudipta Das & Thomas M. Daly & Thomas D. Otto & Natalie J. Spillman & Matthew Wyvratt & Peter Siegl & Jutta Marfurt & Grennady Wirjanata & Bon, 2014. "Pyrazoleamide compounds are potent antimalarials that target Na+ homeostasis in intraerythrocytic Plasmodium falciparum," Nature Communications, Nature, vol. 5(1), pages 1-10, December.
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    1. Krittikorn Kümpornsin & Theerarat Kochakarn & Tomas Yeo & John Okombo & Madeline R. Luth & Johanna Hoshizaki & Mukul Rawat & Richard D. Pearson & Kyra A. Schindler & Sachel Mok & Heekuk Park & Anne-Ca, 2023. "Generation of a mutator parasite to drive resistome discovery in Plasmodium falciparum," Nature Communications, Nature, vol. 14(1), pages 1-14, December.

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