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Bayesian clustering of skewed and multimodal data using geometric skewed normal distributions

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  • Redivo, Edoardo
  • Nguyen, Hien D.
  • Gupta, Mayetri

Abstract

Model-based clustering approaches generally assume that the observations to be clustered are generated from a mixture of distributions, each component of the mixture corresponding to a particular parametric distribution. Most commonly, the underlying distribution is assumed to be normal, which is inadequate for many situations, for example when skewness or multimodality is present within the components. The problem is intensified when the data dimension increases, leading to inaccurate groupings and incorrect inference. A new Bayesian model-based clustering approach is proposed, that can handle a variety of complexities in the data, based on a recently introduced family of geometric skew normal distributions. The performance of this methodology is illustrated through a number of simulation studies and applications to a number of datasets from genomics and medicine.

Suggested Citation

  • Redivo, Edoardo & Nguyen, Hien D. & Gupta, Mayetri, 2020. "Bayesian clustering of skewed and multimodal data using geometric skewed normal distributions," Computational Statistics & Data Analysis, Elsevier, vol. 152(C).
  • Handle: RePEc:eee:csdana:v:152:y:2020:i:c:s0167947320301316
    DOI: 10.1016/j.csda.2020.107040
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    1. Lei Yang & Xianyi Wu, 2014. "A new sufficient condition for identifiability of countably infinite mixtures," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 77(3), pages 377-387, April.
    2. Di Zio, Marco & Guarnera, Ugo & Rocci, Roberto, 2007. "A mixture of mixture models for a classification problem: The unity measure error," Computational Statistics & Data Analysis, Elsevier, vol. 51(5), pages 2573-2585, February.
    3. Teh, Yee Whye & Jordan, Michael I. & Beal, Matthew J. & Blei, David M., 2006. "Hierarchical Dirichlet Processes," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1566-1581, December.
    4. Mathias Drton & Martyn Plummer, 2017. "A Bayesian information criterion for singular models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(2), pages 323-380, March.
    5. repec:dau:papers:123456789/1906 is not listed on IDEAS
    6. Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
    7. Adelchi Azzalini, 2005. "The Skew‐normal Distribution and Related Multivariate Families," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 32(2), pages 159-188, June.
    8. O’Hagan, Adrian & Murphy, Thomas Brendan & Gormley, Isobel Claire & McNicholas, Paul D. & Karlis, Dimitris, 2016. "Clustering with the multivariate normal inverse Gaussian distribution," Computational Statistics & Data Analysis, Elsevier, vol. 93(C), pages 18-30.
    9. Sharon Lee & Geoffrey McLachlan, 2013. "On mixtures of skew normal and skew $$t$$ -distributions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 7(3), pages 241-266, September.
    10. Vrbik, Irene & McNicholas, Paul D., 2014. "Parsimonious skew mixture models for model-based clustering and classification," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 196-210.
    11. Ray, Surajit & Ren, Dan, 2012. "On the upper bound of the number of modes of a multivariate normal mixture," Journal of Multivariate Analysis, Elsevier, vol. 108(C), pages 41-52.
    12. Christian Hennig, 2010. "Methods for merging Gaussian mixture components," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 4(1), pages 3-34, April.
    13. Rasool Roozegar & Saralees Nadarajah, 2017. "The power series skew normal class of distributions," Communications in Statistics - Theory and Methods, Taylor & Francis Journals, vol. 46(22), pages 11404-11423, November.
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