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Ten quick tips for effective dimensionality reduction

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  • Lan Huong Nguyen
  • Susan Holmes

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  • Lan Huong Nguyen & Susan Holmes, 2019. "Ten quick tips for effective dimensionality reduction," PLOS Computational Biology, Public Library of Science, vol. 15(6), pages 1-19, June.
    • Handle: RePEc:plo:pcbi00:1006907
    DOI: 10.1371/journal.pcbi.1006907
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    References listed on IDEAS

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    1. Debruyne, Michiel & Hubert, Mia & Van Horebeek, Johan, 2010. "Detecting influential observations in Kernel PCA," Computational Statistics & Data Analysis, Elsevier, vol. 54(12), pages 3007-3019, December.
    2. Escofier, B. & Pages, J., 1994. "Multiple factor analysis (AFMULT package)," Computational Statistics & Data Analysis, Elsevier, vol. 18(1), pages 121-140, August.
    3. Roger Shepard, 1962. "The analysis of proximities: Multidimensional scaling with an unknown distance function. II," Psychometrika, Springer;The Psychometric Society, vol. 27(3), pages 219-246, September.
    4. Lavit, Christine & Escoufier, Yves & Sabatier, Robert & Traissac, Pierre, 1994. "The ACT (STATIS method)," Computational Statistics & Data Analysis, Elsevier, vol. 18(1), pages 97-119, August.
    5. Kieran R Campbell & Christopher Yau, 2018. "Uncovering pseudotemporal trajectories with covariates from single cell and bulk expression data," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
    6. J. Kruskal, 1964. "Nonmetric multidimensional scaling: A numerical method," Psychometrika, Springer;The Psychometric Society, vol. 29(2), pages 115-129, June.
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    1. Mathy Sane & Miroslav Hajek & Chukwudi Nwaogu & Ratna Chrismiari Purwestri, 2021. "Subsidy as An Economic Instrument for Environmental Protection: A Case of Global Fertilizer Use," Sustainability, MDPI, vol. 13(16), pages 1-20, August.
    2. Pratheepa Jeganathan & Susan P. Holmes, 2021. "A Statistical Perspective on the Challenges in Molecular Microbial Biology," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(2), pages 131-160, June.
    3. Nicola M. Moloney & Konstantin Barylyuk & Eelco Tromer & Oliver M. Crook & Lisa M. Breckels & Kathryn S. Lilley & Ross F. Waller & Paula MacGregor, 2023. "Mapping diversity in African trypanosomes using high resolution spatial proteomics," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    4. Alexandre L. M. Levada, 2021. "PCA-KL: a parametric dimensionality reduction approach for unsupervised metric learning," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 15(4), pages 829-868, December.
    5. Louis Anthony Cox, 2020. "Answerable and Unanswerable Questions in Risk Analysis with Open‐World Novelty," Risk Analysis, John Wiley & Sons, vol. 40(S1), pages 2144-2177, November.

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