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Conformational changes in the essential E. coli septal cell wall synthesis complex suggest an activation mechanism

Author

Listed:
  • Brooke M. Britton

    (Johns Hopkins School of Medicine)

  • Remy A. Yovanno

    (Johns Hopkins School of Medicine)

  • Sara F. Costa

    (Universidade NOVA de Lisboa)

  • Joshua McCausland

    (Johns Hopkins School of Medicine)

  • Albert Y. Lau

    (Johns Hopkins School of Medicine)

  • Jie Xiao

    (Johns Hopkins School of Medicine)

  • Zach Hensel

    (Universidade NOVA de Lisboa)

Abstract

The bacterial divisome is a macromolecular machine composed of more than 30 proteins that controls cell wall constriction during division. Here, we present a model of the structure and dynamics of the core complex of the E. coli divisome, supported by a combination of structure prediction, molecular dynamics simulation, single-molecule imaging, and mutagenesis. We focus on the septal cell wall synthase complex formed by FtsW and FtsI, and its regulators FtsQ, FtsL, FtsB, and FtsN. The results indicate extensive interactions in four regions in the periplasmic domains of the complex. FtsQ, FtsL, and FtsB support FtsI in an extended conformation, with the FtsI transpeptidase domain lifted away from the membrane through interactions among the C-terminal domains. FtsN binds between FtsI and FtsL in a region rich in residues with superfission (activating) and dominant negative (inhibitory) mutations. Mutagenesis experiments and simulations suggest that the essential domain of FtsN links FtsI and FtsL together, potentially modulating interactions between the anchor-loop of FtsI and the putative catalytic cavity of FtsW, thus suggesting a mechanism of how FtsN activates the cell wall synthesis activities of FtsW and FtsI.

Suggested Citation

  • Brooke M. Britton & Remy A. Yovanno & Sara F. Costa & Joshua McCausland & Albert Y. Lau & Jie Xiao & Zach Hensel, 2023. "Conformational changes in the essential E. coli septal cell wall synthesis complex suggest an activation mechanism," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39921-4
    DOI: 10.1038/s41467-023-39921-4
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    References listed on IDEAS

    as
    1. Zhixin Lyu & Atsushi Yahashiri & Xinxing Yang & Joshua W. McCausland & Gabriela M. Kaus & Ryan McQuillen & David S. Weiss & Jie Xiao, 2022. "FtsN maintains active septal cell wall synthesis by forming a processive complex with the septum-specific peptidoglycan synthases in E. coli," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    2. Patrick Bryant & Gabriele Pozzati & Arne Elofsson, 2022. "Author Correction: Improved prediction of protein-protein interactions using AlphaFold2," Nature Communications, Nature, vol. 13(1), pages 1-1, December.
    3. Patrick Bryant & Gabriele Pozzati & Arne Elofsson, 2022. "Improved prediction of protein-protein interactions using AlphaFold2," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    4. Joshua W. McCausland & Xinxing Yang & Georgia R. Squyres & Zhixin Lyu & Kevin E. Bruce & Melissa M. Lamanna & Bill Söderström & Ethan C. Garner & Malcolm E. Winkler & Jie Xiao & Jian Liu, 2021. "Treadmilling FtsZ polymers drive the directional movement of sPG-synthesis enzymes via a Brownian ratchet mechanism," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    5. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    6. Megan Sjodt & Kelly Brock & Genevieve Dobihal & Patricia D. A. Rohs & Anna G. Green & Thomas A. Hopf & Alexander J. Meeske & Veerasak Srisuknimit & Daniel Kahne & Suzanne Walker & Debora S. Marks & Th, 2018. "Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis," Nature, Nature, vol. 556(7699), pages 118-121, April.
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    Cited by:

    1. Han Gong & Di Yan & Yuanyuan Cui & Ying Li & Jize Yang & Wenjie Yang & Rui Zhan & Qianqian Wan & Xinci Wang & Haofeng He & Xiangdong Chen & Joe Lutkenhaus & Xinxing Yang & Shishen Du, 2024. "The divisome is a self-enhancing machine in Escherichia coli and Caulobacter crescentus," Nature Communications, Nature, vol. 15(1), pages 1-19, December.

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