IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-33771-2.html
   My bibliography  Save this article

Response of soil viral communities to land use changes

Author

Listed:
  • Hu Liao

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Hu Li

    (Chinese Academy of Sciences)

  • Chen-Song Duan

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Xin-Yuan Zhou

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Qiu-Ping Luo

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Xin-Li An

    (Chinese Academy of Sciences)

  • Yong-Guan Zhu

    (Chinese Academy of Sciences
    Chinese Academy of Sciences)

  • Jian-Qiang Su

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

Abstract

Soil viruses remain understudied when compared to virus found in aquatic ecosystems. Here, we investigate the ecological patterns of soil viral communities across various land use types encompassing forest, agricultural, and urban soil in Xiamen, China. We recovered 59,626 viral operational taxonomic units (vOTUs) via size-fractioned viromic approach with additional mitomycin C treatment to induce virus release from bacterial fraction. Our results show that viral communities are significantly different amongst the land use types considered. A microdiversity analysis indicates that selection act on soil vOTUs, resulting in disparities between land use associated viral communities. Soil pH is one of the major determinants of viral community structure, associated with changes of in-silico predicted host compositions of soil vOTUs. Habitat disturbance and variation of soil moisture potentially contribute to the dynamics of putative lysogenic vOTUs. These findings provide mechanistic understandings of the ecology and evolution of soil viral communities in changing environments.

Suggested Citation

  • Hu Liao & Hu Li & Chen-Song Duan & Xin-Yuan Zhou & Qiu-Ping Luo & Xin-Li An & Yong-Guan Zhu & Jian-Qiang Su, 2022. "Response of soil viral communities to land use changes," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33771-2
    DOI: 10.1038/s41467-022-33771-2
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-33771-2
    File Function: Abstract
    Download Restriction: no
    File URL: https://libkey.io/10.1038/s41467-022-33771-2?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. B. Knowles & C. B. Silveira & B. A. Bailey & K. Barott & V. A. Cantu & A. G. Cobián-Güemes & F. H. Coutinho & E. A. Dinsdale & B. Felts & K. A. Furby & E. E. George & K. T. Green & G. B. Gregoracci & , 2016. "Correction: Corrigendum: Lytic to temperate switching of viral communities," Nature, Nature, vol. 539(7627), pages 123-123, November.
    2. Tim Newbold & Lawrence N. Hudson & Samantha L. L. Hill & Sara Contu & Igor Lysenko & Rebecca A. Senior & Luca Börger & Dominic J. Bennett & Argyrios Choimes & Ben Collen & Julie Day & Adriana De Palma, 2015. "Global effects of land use on local terrestrial biodiversity," Nature, Nature, vol. 520(7545), pages 45-50, April.
    3. B. Knowles & C. B. Silveira & B. A. Bailey & K. Barott & V. A. Cantu & A. G. Cobián-Güemes & F. H. Coutinho & E. A. Dinsdale & B. Felts & K. A. Furby & E. E. George & K. T. Green & G. B. Gregoracci & , 2016. "Lytic to temperate switching of viral communities," Nature, Nature, vol. 531(7595), pages 466-470, March.
    4. Karina Winkler & Richard Fuchs & Mark Rounsevell & Martin Herold, 2021. "Global land use changes are four times greater than previously estimated," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
    5. Mohammad Bahram & Falk Hildebrand & Sofia K. Forslund & Jennifer L. Anderson & Nadejda A. Soudzilovskaia & Peter M. Bodegom & Johan Bengtsson-Palme & Sten Anslan & Luis Pedro Coelho & Helery Harend & , 2018. "Structure and function of the global topsoil microbiome," Nature, Nature, vol. 560(7717), pages 233-237, August.
    6. Chaopeng Hong & Jennifer A. Burney & Julia Pongratz & Julia E. M. S. Nabel & Nathaniel D. Mueller & Robert B. Jackson & Steven J. Davis, 2021. "Global and regional drivers of land-use emissions in 1961–2017," Nature, Nature, vol. 589(7843), pages 554-561, January.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Wise, Karlissa & Carter, LaToya & Bamba, Leslie Alyssa & Barr, Rachel, 2024. "How Do Child Protective Service (CPS) Policies Keep Employees Safe: ACaseworker’s Perspective," Children and Youth Services Review, Elsevier, vol. 162(C).
    2. Liyun An & Xinwu Liu & Jianwei Wang & Jinbo Xu & Xiaoli Chen & Xiaonan Liu & Bingxin Hu & Yong Nie & Xiao-Lei Wu, 2024. "Global diversity and ecological functions of viruses inhabiting oil reservoirs," Nature Communications, Nature, vol. 15(1), pages 1-16, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Simon P. K. Bowring & Wei Li & Florent Mouillot & Thais M. Rosan & Philippe Ciais, 2024. "Road fragment edges enhance wildfire incidence and intensity, while suppressing global burned area," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    2. de la Riva, Enrique G. & Ulrich, Werner & Batáry, Péter & Baudry, Julia & Beaumelle, Léa & Bucher, Roman & Čerevková, Andrea & Felipe-Lucia, María R. & Gallé, Róbert & Kesse-Guyot, Emmanuelle & Rembia, 2023. "From functional diversity to human well-being: A conceptual framework for agroecosystem sustainability," Agricultural Systems, Elsevier, vol. 208(C).
    3. Long Li & Wei Fu & Mingcan Luo, 2022. "Spatial and Temporal Variation and Prediction of Ecosystem Carbon Stocks in Yunnan Province Based on Land Use Change," IJERPH, MDPI, vol. 19(23), pages 1-14, November.
    4. Javier Lopez-Simon & Marina Vila-Nistal & Aleksandra Rosenova & Daniele Corte & Federico Baltar & Manuel Martinez-Garcia, 2023. "Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    5. Julia Noë & Karl-Heinz Erb & Sarah Matej & Andreas Magerl & Manan Bhan & Simone Gingrich, 2021. "Altered growth conditions more than reforestation counteracted forest biomass carbon emissions 1990–2020," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
    6. Alexa M. Nicolas & Ella T. Sieradzki & Jennifer Pett-Ridge & Jillian F. Banfield & Michiko E. Taga & Mary K. Firestone & Steven J. Blazewicz, 2023. "A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    7. Joachim Johansen & Damian R. Plichta & Jakob Nybo Nissen & Marie Louise Jespersen & Shiraz A. Shah & Ling Deng & Jakob Stokholm & Hans Bisgaard & Dennis Sandris Nielsen & Søren J. Sørensen & Simon Ras, 2022. "Genome binning of viral entities from bulk metagenomics data," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    8. Mengzhi Ji & Jiayin Zhou & Yan Li & Kai Ma & Wen Song & Yueyue Li & Jizhong Zhou & Qichao Tu, 2024. "Biodiversity of mudflat intertidal viromes along the Chinese coasts," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    9. Liyun An & Xinwu Liu & Jianwei Wang & Jinbo Xu & Xiaoli Chen & Xiaonan Liu & Bingxin Hu & Yong Nie & Xiao-Lei Wu, 2024. "Global diversity and ecological functions of viruses inhabiting oil reservoirs," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    10. Yuxin Qi & Yuandong Hu, 2024. "Spatiotemporal Variation and Driving Factors Analysis of Habitat Quality: A Case Study in Harbin, China," Land, MDPI, vol. 13(1), pages 1-21, January.
    11. Law, Elizabeth A. & Macchi, Leandro & Baumann, Matthias & Decarre, Julieta & Gavier-Pizarro, Gregorio & Levers, Christian & Mastrangelo, Matías E. & Murray, Francisco & Müller, Daniel & Piquer-Rodrígu, 2021. "Fading opportunities for mitigating agriculture-environment trade-offs in a south American deforestation hotspot," EconStor Open Access Articles and Book Chapters, ZBW - Leibniz Information Centre for Economics, vol. 262.
    12. Mohamed Fomba & Zinash Delebo Osunde & Souleymane Sidi Traoré & Appollonia Okhimamhe & Janina Kleemann & Christine Fürst, 2024. "Urban Green Spaces in Bamako and Sikasso, Mali: Land Use Changes and Perceptions," Land, MDPI, vol. 13(1), pages 1-20, January.
    13. Guangdong Li & Chuanglin Fang & James E. M. Watson & Siao Sun & Wei Qi & Zhenbo Wang & Jianguo Liu, 2024. "Mixed effectiveness of global protected areas in resisting habitat loss," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    14. Sarah R. Weiskopf & Forest Isbell & Maria Isabel Arce-Plata & Moreno Di Marco & Mike Harfoot & Justin Johnson & Susannah B. Lerman & Brian W. Miller & Toni Lyn Morelli & Akira S. Mori & Ensheng Weng &, 2024. "Biodiversity loss reduces global terrestrial carbon storage," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    15. Shuangshuang Liu & Qipeng Liao & Mingzhu Xiao & Dengyue Zhao & Chunbo Huang, 2022. "Spatial and Temporal Variations of Habitat Quality and Its Response of Landscape Dynamic in the Three Gorges Reservoir Area, China," IJERPH, MDPI, vol. 19(6), pages 1-20, March.
    16. Karlsson, Johan O. & Röös, Elin, 2019. "Resource-efficient use of land and animals—Environmental impacts of food systems based on organic cropping and avoided food-feed competition," Land Use Policy, Elsevier, vol. 85(C), pages 63-72.
    17. Gyanendra Prasad Joshi & Fayadh Alenezi & Gopalakrishnan Thirumoorthy & Ashit Kumar Dutta & Jinsang You, 2021. "Ensemble of Deep Learning-Based Multimodal Remote Sensing Image Classification Model on Unmanned Aerial Vehicle Networks," Mathematics, MDPI, vol. 9(22), pages 1-17, November.
    18. Tuan Nguyen Tran, 2024. "Comparing the process of converting land use purposes between socio-economic regions in Vietnam from 2007 to 2020," Environmental & Socio-economic Studies, Sciendo, vol. 12(3), pages 51-62.
    19. Wen Zhao & Yali Yin & Shixiong Li & Jingjing Liu & Yiling Dong & Shifeng Su, 2022. "Soil Microbial Community Varied with Vegetation Types on a Small Regional Scale of the Qilian Mountains," Sustainability, MDPI, vol. 14(13), pages 1-15, June.
    20. Hanwen Zhang & Yanqing Lang, 2022. "Quantifying and Analyzing the Responses of Habitat Quality to Land Use Change in Guangdong Province, China over the Past 40 Years," Land, MDPI, vol. 11(6), pages 1-23, May.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33771-2. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.