IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v213y2008i1p63-72.html
   My bibliography  Save this article

Rethinking receiver operating characteristic analysis applications in ecological niche modeling

Author

Listed:
  • Peterson, A. Townsend
  • Papeş, Monica
  • Soberón, Jorge

Abstract

The area under the curve (AUC) of the receiver operating characteristic (ROC) has become a dominant tool in evaluating the accuracy of models predicting distributions of species. ROC has the advantage of being threshold-independent, and as such does not require decisions regarding thresholds of what constitutes a prediction of presence versus a prediction of absence. However, we show that, comparing two ROCs, using the AUC systematically undervalues models that do not provide predictions across the entire spectrum of proportional areas in the study area. Current ROC approaches in ecological niche modeling applications are also inappropriate because the two error components are weighted equally. We recommend a modification of ROC that remedies these problems, using partial-area ROC approaches to provide a firmer foundation for evaluation of predictions from ecological niche models. A worked example demonstrates that models that are evaluated favorably by traditional ROC AUCs are not necessarily the best when niche modeling considerations are incorporated into the design of the test.

Suggested Citation

  • Peterson, A. Townsend & Papeş, Monica & Soberón, Jorge, 2008. "Rethinking receiver operating characteristic analysis applications in ecological niche modeling," Ecological Modelling, Elsevier, vol. 213(1), pages 63-72.
  • Handle: RePEc:eee:ecomod:v:213:y:2008:i:1:p:63-72
    DOI: 10.1016/j.ecolmodel.2007.11.008
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380007006163
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2007.11.008?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Lori E. Dodd & Margaret S. Pepe, 2003. "Partial AUC Estimation and Regression," Biometrics, The International Biometric Society, vol. 59(3), pages 614-623, September.
    2. Christopher J. Raxworthy & Enrique Martinez-Meyer & Ned Horning & Ronald A. Nussbaum & Gregory E. Schneider & Miguel A. Ortega-Huerta & A. Townsend Peterson, 2003. "Predicting distributions of known and unknown reptile species in Madagascar," Nature, Nature, vol. 426(6968), pages 837-841, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Margaret Sullivan Pepe & Tianxi Cai, 2004. "The Analysis of Placement Values for Evaluating Discriminatory Measures," Biometrics, The International Biometric Society, vol. 60(2), pages 528-535, June.
    2. Ángel Beade & Manuel Rodríguez & José Santos, 2024. "Multiperiod Bankruptcy Prediction Models with Interpretable Single Models," Computational Economics, Springer;Society for Computational Economics, vol. 64(3), pages 1357-1390, September.
    3. Man-Jen Hsu & Huey-Miin Hsueh, 2013. "The linear combinations of biomarkers which maximize the partial area under the ROC curves," Computational Statistics, Springer, vol. 28(2), pages 647-666, April.
    4. Soutik Ghosal & Zhen Chen, 2022. "Discriminatory Capacity of Prenatal Ultrasound Measures for Large-for-Gestational-Age Birth: A Bayesian Approach to ROC Analysis Using Placement Values," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(1), pages 1-22, April.
    5. Pie, Marcio R. & Meyer, Andreas L.S. & Firkowski, Carina R. & Ribeiro, Luiz F. & Bornschein, Marcos R., 2013. "Understanding the mechanisms underlying the distribution of microendemic montane frogs (Brachycephalus spp., Terrarana: Brachycephalidae) in the Brazilian Atlantic Rainforest," Ecological Modelling, Elsevier, vol. 250(C), pages 165-176.
    6. Holly Janes & Gary Longton & Margaret S. Pepe, 2009. "Accommodating covariates in receiver operating characteristic analysis," Stata Journal, StataCorp LP, vol. 9(1), pages 17-39, March.
    7. Ochoa-Ochoa, Leticia M. & Flores-Villela, Oscar A. & Bezaury-Creel, Juan E., 2016. "Using one vs. many, sensitivity and uncertainty analyses of species distribution models with focus on conservation area networks," Ecological Modelling, Elsevier, vol. 320(C), pages 372-382.
    8. Silva, Daniel P. & Gonzalez, Victor H. & Melo, Gabriel A.R. & Lucia, Mariano & Alvarez, Leopoldo J. & De Marco, Paulo, 2014. "Seeking the flowers for the bees: Integrating biotic interactions into niche models to assess the distribution of the exotic bee species Lithurgus huberi in South America," Ecological Modelling, Elsevier, vol. 273(C), pages 200-209.
    9. Herkt, K. Matthias B. & Barnikel, Günter & Skidmore, Andrew K. & Fahr, Jakob, 2016. "A high-resolution model of bat diversity and endemism for continental Africa," Ecological Modelling, Elsevier, vol. 320(C), pages 9-28.
    10. Gigliarano, Chiara & Figini, Silvia & Muliere, Pietro, 2014. "Making classifier performance comparisons when ROC curves intersect," Computational Statistics & Data Analysis, Elsevier, vol. 77(C), pages 300-312.
    11. Fois, Mauro & Cuena-Lombraña, Alba & Fenu, Giuseppe & Bacchetta, Gianluigi, 2018. "Using species distribution models at local scale to guide the search of poorly known species: Review, methodological issues and future directions," Ecological Modelling, Elsevier, vol. 385(C), pages 124-132.
    12. Kelly Jane Easterday & Patrick J McIntyre & James H Thorne & Maria J Santos & Maggi Kelly, 2016. "Assessing Threats and Conservation Status of Historical Centers of Oak Richness in California," Urban Planning, Cogitatio Press, vol. 1(4), pages 65-78.
    13. Yu, Wenbao & Park, Taesung, 2015. "Two simple algorithms on linear combination of multiple biomarkers to maximize partial area under the ROC curve," Computational Statistics & Data Analysis, Elsevier, vol. 88(C), pages 15-27.
    14. Carlos Yañez-Arenas & A Townsend Peterson & Pierre Mokondoko & Octavio Rojas-Soto & Enrique Martínez-Meyer, 2014. "The Use of Ecological Niche Modeling to Infer Potential Risk Areas of Snakebite in the Mexican State of Veracruz," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-9, June.
    15. Yousef, Waleed A., 2013. "Assessing classifiers in terms of the partial area under the ROC curve," Computational Statistics & Data Analysis, Elsevier, vol. 64(C), pages 51-70.
    16. Margaret S. Pepe & Gary Longton & Holly Janes, 2009. "Estimation and comparison of receiver operating characteristic curves," Stata Journal, StataCorp LP, vol. 9(1), pages 1-16, March.
    17. Pardo-Fernandez, Juan Carlos & Rodriguez-alvarez, Maria Xose & Van Keilegom, Ingrid, 2013. "A review on ROC curves in the presence of covariates," LIDAM Discussion Papers ISBA 2013050, Université catholique de Louvain, Institute of Statistics, Biostatistics and Actuarial Sciences (ISBA).
    18. Mei-Cheng Wang & Shanshan Li, 2012. "Bivariate Marker Measurements and ROC Analysis," Biometrics, The International Biometric Society, vol. 68(4), pages 1207-1218, December.
    19. Eunhee Kim & Zheng Zhang & Youdan Wang & Donglin Zeng, 2014. "Power calculation for comparing diagnostic accuracies in a multi-reader, multi-test design," Biometrics, The International Biometric Society, vol. 70(4), pages 1033-1041, December.
    20. Merve Basol & Dincer Goksuluk & Ergun Karaagaoglu, 2023. "Comparing the diagnostic performance of methods used in a full-factorial design multi-reader multi-case studies," Computational Statistics, Springer, vol. 38(3), pages 1537-1553, September.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:213:y:2008:i:1:p:63-72. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.