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Synthesis of the NEMURO model studies and future directions of marine ecosystem modeling

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  • Werner, Francisco E.
  • Ito, Shin-Ichi
  • Megrey, Bernard A.
  • Kishi, Michio J.

Abstract

NEMURO, the North Pacific Ecosystem Model for Understanding Regional Oceanography, simulates the temporal evolution and dynamics of the North Pacific's nutrient–phytoplankton–zooplankton food web. The approach of developing a single model formulation allowed quantitative comparisons across various locations and time periods. Building on a common foundation enabled the linkages between lower trophic levels to the higher trophic (fish) components to proceed systematically. NEMURO was extended to NEMURO.FISH by using the lower trophic level output of NEMURO as input to a bioenergetic-based model of fish growth and population dynamics. This paper summarizes the contributions of individual papers that comprise this issue of Ecological Modelling and that all used the NEMURO family of models. Contributions represent a rich set of case-studies and in-depth modeling studies focused on the North Pacific that addressed: oceanic biogeochemistry, regional and seasonal variability of phytoplankton and zooplankton, reconstruction of 40–50 years of plankton dynamics, effects of climate on herring and saury growth and population dynamics, the feasibility of automatic calibration methods, the sensitivity of the model to parameter values, and projections of future states of the ecosystem under global warming. Next steps in the evolution of NEMURO are suggested and include increased resolution of the physical model underlying NEMURO, the addition of new biological state variables at the lower trophic levels to better represent the diversity of oceanic species and their potential for different responses under changing environmental conditions, and the addition of more higher trophic level species to allow for inter-specific (competition and predation) interactions. The NEMURO effort involved a diverse group of researchers working jointly on a common problem for several years. Consequently, the resulting contributions, even at the level of the individual papers, provide a broader perspective and integration of the results than would have occurred by working in isolation. The benefits of a large-scale collaborative effort to develop a common model formulation are clearly illustrated by the papers in this issue.

Suggested Citation

  • Werner, Francisco E. & Ito, Shin-Ichi & Megrey, Bernard A. & Kishi, Michio J., 2007. "Synthesis of the NEMURO model studies and future directions of marine ecosystem modeling," Ecological Modelling, Elsevier, vol. 202(1), pages 211-223.
  • Handle: RePEc:eee:ecomod:v:202:y:2007:i:1:p:211-223
    DOI: 10.1016/j.ecolmodel.2006.08.019
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    1. Rose, Kenneth A. & Megrey, Bernard A. & Werner, Francisco E. & Ware, Dan M., 2007. "Calibration of the NEMURO nutrient–phytoplankton–zooplankton food web model to a coastal ecosystem: Evaluation of an automated calibration approach," Ecological Modelling, Elsevier, vol. 202(1), pages 38-51.
    2. Yoshie, Naoki & Yamanaka, Yasuhiro & Rose, Kenneth A. & Eslinger, David L. & Ware, Daniel M. & Kishi, Michio J., 2007. "Parameter sensitivity study of the NEMURO lower trophic level marine ecosystem model," Ecological Modelling, Elsevier, vol. 202(1), pages 26-37.
    3. Ito, Shin-Ichi & Megrey, Bernard A. & Kishi, Michio J. & Mukai, Daiki & Kurita, Yutaka & Ueno, Yasuhiro & Yamanaka, Yasuhiro, 2007. "On the interannual variability of the growth of Pacific saury (Cololabis saira): A simple 3-box model using NEMURO.FISH," Ecological Modelling, Elsevier, vol. 202(1), pages 174-183.
    4. Hashioka, Taketo & Yamanaka, Yasuhiro, 2007. "Seasonal and regional variations of phytoplankton groups by top–down and bottom–up controls obtained by a 3D ecosystem model," Ecological Modelling, Elsevier, vol. 202(1), pages 68-80.
    5. Megrey, Bernard A. & Rose, Kenneth A. & Klumb, Robert A. & Hay, Douglas E. & Werner, Francisco E. & Eslinger, David L. & Smith, S. Lan, 2007. "A bioenergetics-based population dynamics model of Pacific herring (Clupea harengus pallasi) coupled to a lower trophic level nutrient–phytoplankton–zooplankton model: Description, calibration, and se," Ecological Modelling, Elsevier, vol. 202(1), pages 144-164.
    6. Grégory Beaugrand & Keith M. Brander & J. Alistair Lindley & Sami Souissi & Philip C. Reid, 2003. "Plankton effect on cod recruitment in the North Sea," Nature, Nature, vol. 426(6967), pages 661-664, December.
    7. Mukai, Daiki & Kishi, Michio J. & Ito, Shin-ichi & Kurita, Yutaka, 2007. "The importance of spawning season on the growth of Pacific saury: A model-based study using NEMURO.FISH," Ecological Modelling, Elsevier, vol. 202(1), pages 165-173.
    8. Aita, Maki Noguchi & Yamanaka, Yasuhiro & Kishi, Michio J., 2007. "Interdecadal variation of the lower trophic ecosystem in the northern Pacific between 1948 and 2002, in a 3-D implementation of the NEMURO model," Ecological Modelling, Elsevier, vol. 202(1), pages 81-94.
    9. Wainwright, Thomas C. & Feinberg, Leah R. & Hooff, Rian C. & Peterson, William T., 2007. "A comparison of two lower trophic models for the California Current System," Ecological Modelling, Elsevier, vol. 202(1), pages 120-131.
    10. Hashioka, Taketo & Yamanaka, Yasuhiro, 2007. "Ecosystem change in the western North Pacific associated with global warming using 3D-NEMURO," Ecological Modelling, Elsevier, vol. 202(1), pages 95-104.
    11. Fujii, Masahiko & Yamanaka, Yasuhiro & Nojiri, Yukihiro & Kishi, Michio J. & Chai, Fei, 2007. "Comparison of seasonal characteristics in biogeochemistry among the subarctic North Pacific stations described with a NEMURO-based marine ecosystem model," Ecological Modelling, Elsevier, vol. 202(1), pages 52-67.
    12. Kishi, Michio J. & Kashiwai, Makoto & Ware, Daniel M. & Megrey, Bernard A. & Eslinger, David L. & Werner, Francisco E. & Noguchi-Aita, Maki & Azumaya, Tomonori & Fujii, Masahiko & Hashimoto, Shinji & , 2007. "NEMURO—a lower trophic level model for the North Pacific marine ecosystem," Ecological Modelling, Elsevier, vol. 202(1), pages 12-25.
    13. James C. Orr & Victoria J. Fabry & Olivier Aumont & Laurent Bopp & Scott C. Doney & Richard A. Feely & Anand Gnanadesikan & Nicolas Gruber & Akio Ishida & Fortunat Joos & Robert M. Key & Keith Lindsay, 2005. "Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms," Nature, Nature, vol. 437(7059), pages 681-686, September.
    14. Batchelder, Harold P. & Kashiwai, Makoto, 2007. "Ecosystem modeling with NEMURO within the PICES Climate Change and Carrying Capacity program," Ecological Modelling, Elsevier, vol. 202(1), pages 7-11.
    15. Komatsu, Kosei & Matsukawa, Yasuo & Nakata, Kaoru & Ichikawa, Tadafumi & Sasaki, Katsuyuki, 2007. "Effects of advective processes on planktonic distributions in the Kuroshio region using a 3-D lower trophic model and a data assimilative OGCM," Ecological Modelling, Elsevier, vol. 202(1), pages 105-119.
    16. Rose, Kenneth A. & Werner, Francisco E. & Megrey, Bernard A. & Aita, Maki Noguchi & Yamanaka, Yasuhiro & Hay, Douglas E. & Schweigert, Jake F. & Foster, Matthew Birch, 2007. "Simulated herring growth responses in the Northeastern Pacific to historic temperature and zooplankton conditions generated by the 3-dimensional NEMURO nutrient–phytoplankton–zooplankton model," Ecological Modelling, Elsevier, vol. 202(1), pages 184-195.
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    1. Libralato, Simone & Solidoro, Cosimo, 2009. "Bridging biogeochemical and food web models for an End-to-End representation of marine ecosystem dynamics: The Venice lagoon case study," Ecological Modelling, Elsevier, vol. 220(21), pages 2960-2971.
    2. Kearney, Kelly A. & Stock, Charles & Aydin, Kerim & Sarmiento, Jorge L., 2012. "Coupling planktonic ecosystem and fisheries food web models for a pelagic ecosystem: Description and validation for the subarctic Pacific," Ecological Modelling, Elsevier, vol. 237, pages 43-62.
    3. Link, Jason & Col, Laurel & Guida, Vincent & Dow, David & O’Reilly, John & Green, Jack & Overholtz, William & Palka, Debra & Legault, Chris & Vitaliano, Joseph & Griswold, Carolyn & Fogarty, Michael &, 2009. "Response of balanced network models to large-scale perturbation: Implications for evaluating the role of small pelagics in the Gulf of Maine," Ecological Modelling, Elsevier, vol. 220(3), pages 351-369.
    4. Kishi, Michio J. & Kashiwai, Makoto & Ware, Daniel M. & Megrey, Bernard A. & Eslinger, David L. & Werner, Francisco E. & Noguchi-Aita, Maki & Azumaya, Tomonori & Fujii, Masahiko & Hashimoto, Shinji & , 2007. "NEMURO—a lower trophic level model for the North Pacific marine ecosystem," Ecological Modelling, Elsevier, vol. 202(1), pages 12-25.
    5. Castellani, Marco & Rosland, Rune & Urtizberea, Agurtzane & Fiksen, Øyvind, 2013. "A mass-balanced pelagic ecosystem model with size-structured behaviourally adaptive zooplankton and fish," Ecological Modelling, Elsevier, vol. 251(C), pages 54-63.

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