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Multiply imputing missing values in data sets with mixed measurement scales using a sequence of generalised linear models

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  • Lee, Min Cherng
  • Mitra, Robin

Abstract

Multiple imputation is a commonly used approach to deal with missing values. In this approach, an imputer repeatedly imputes the missing values by taking draws from the posterior predictive distribution for the missing values conditional on the observed values, and releases these completed data sets to analysts. With each completed data set the analyst performs the analysis of interest, treating the data as if it were fully observed. These analyses are then combined with standard combining rules, allowing the analyst to make appropriate inferences which take into account the uncertainty present due to the missing data. In order to preserve the statistical properties present in the data, the imputer must use a plausible distribution to generate the imputed values. In data sets containing variables with different measurement scales, e.g. some categorical and some continuous variables, this is a challenging problem. A method is proposed to multiply impute missing values in such data sets by modelling the joint distribution of the variables in the data through a sequence of generalised linear models, and data augmentation methods are used to draw imputations from a proper posterior distribution using Markov Chain Monte Carlo (MCMC). The performance of the proposed method is illustrated using simulation studies and on a data set taken from a breast feeding study.

Suggested Citation

  • Lee, Min Cherng & Mitra, Robin, 2016. "Multiply imputing missing values in data sets with mixed measurement scales using a sequence of generalised linear models," Computational Statistics & Data Analysis, Elsevier, vol. 95(C), pages 24-38.
  • Handle: RePEc:eee:csdana:v:95:y:2016:i:c:p:24-38
    DOI: 10.1016/j.csda.2015.08.004
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    References listed on IDEAS

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    1. Xu, Linzhi & Zhang, Jiajia, 2010. "Multiple imputation method for the semiparametric accelerated failure time mixture cure model," Computational Statistics & Data Analysis, Elsevier, vol. 54(7), pages 1808-1816, July.
    2. Donald B. Rubin, 2003. "Nested multiple imputation of NMES via partially incompatible MCMC," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 57(1), pages 3-18, February.
    3. Joseph G. Ibrahim & Ming-Hui Chen & Stuart R. Lipsitz & Amy H. Herring, 2005. "Missing-Data Methods for Generalized Linear Models: A Comparative Review," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 332-346, March.
    4. van Buuren, Stef & Groothuis-Oudshoorn, Karin, 2011. "mice: Multivariate Imputation by Chained Equations in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 45(i03).
    5. Bernhardt, Paul W. & Wang, Huixia Judy & Zhang, Daowen, 2014. "Flexible modeling of survival data with covariates subject to detection limits via multiple imputation," Computational Statistics & Data Analysis, Elsevier, vol. 69(C), pages 81-91.
    6. Hapfelmeier, A. & Ulm, K., 2014. "Variable selection by Random Forests using data with missing values," Computational Statistics & Data Analysis, Elsevier, vol. 80(C), pages 129-139.
    7. Consentino, Fabrizio & Claeskens, Gerda, 2010. "Order selection tests with multiply imputed data," Computational Statistics & Data Analysis, Elsevier, vol. 54(10), pages 2284-2295, October.
    8. J. G. Ibrahim & S. R. Lipsitz & M.‐H. Chen, 1999. "Missing covariates in generalized linear models when the missing data mechanism is non‐ignorable," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(1), pages 173-190.
    9. Ming‐Hui Chen & Joseph G. Ibrahim, 2001. "Maximum Likelihood Methods for Cure Rate Models with Missing Covariates," Biometrics, The International Biometric Society, vol. 57(1), pages 43-52, March.
    10. Andrew Gelman & Iven Van Mechelen & Geert Verbeke & Daniel F. Heitjan & Michel Meulders, 2005. "Multiple Imputation for Model Checking: Completed-Data Plots with Missing and Latent Data," Biometrics, The International Biometric Society, vol. 61(1), pages 74-85, March.
    11. Rashid, S. & Mitra, R. & Steele, R.J., 2015. "Using mixtures of t densities to make inferences in the presence of missing data with a small number of multiply imputed data sets," Computational Statistics & Data Analysis, Elsevier, vol. 92(C), pages 84-96.
    12. Mitra Robin & Dunson David, 2010. "Two-Level Stochastic Search Variable Selection in GLMs with Missing Predictors," The International Journal of Biostatistics, De Gruyter, vol. 6(1), pages 1-40, October.
    13. W. R. Gilks & P. Wild, 1992. "Adaptive Rejection Sampling for Gibbs Sampling," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 41(2), pages 337-348, June.
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