IDEAS home Printed from https://ideas.repec.org/a/plo/pcbi00/1006599.html
   My bibliography  Save this article

Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited

Author

Listed:
  • Dave Osthus
  • Ashlynn R Daughton
  • Reid Priedhorsky

Abstract

The ability to produce timely and accurate flu forecasts in the United States can significantly impact public health. Augmenting forecasts with internet data has shown promise for improving forecast accuracy and timeliness in controlled settings, but results in practice are less convincing, as models augmented with internet data have not consistently outperformed models without internet data. In this paper, we perform a controlled experiment, taking into account data backfill, to improve clarity on the benefits and limitations of augmenting an already good flu forecasting model with internet-based nowcasts. Our results show that a good flu forecasting model can benefit from the augmentation of internet-based nowcasts in practice for all considered public health-relevant forecasting targets. The degree of forecast improvement due to nowcasting, however, is uneven across forecasting targets, with short-term forecasting targets seeing the largest improvements and seasonal targets such as the peak timing and intensity seeing relatively marginal improvements. The uneven forecasting improvements across targets hold even when “perfect” nowcasts are used. These findings suggest that further improvements to flu forecasting, particularly seasonal targets, will need to derive from other, non-nowcasting approaches.Author summary: It has been demonstrated in retrospective settings that flu forecasting can be improved by augmenting forecasting models with internet-based nowcasts (i.e., one-week-ahead forecasts generated with internet data). The improvement of internet-assisted forecasting models, however, has not translated to overall improvement in flu forecasting of public health-relevant targets. This is partially due to the relatively simple forecasting models that nowcasts are augmenting and partially because nowcasts do not directly inform all public health-relevant targets, such as the start, the peak timing, and the peak intensity of the flu season (i.e., seasonal targets). This paper conducts an experiment to provide clarity on the benefits and limitations of augmenting flu forecasting models with internet-based nowcasts in practice. We show that 1) nowcasts can improve flu forecasting across all geographic regions, flu seasons, and public health-relevant targets, including seasonal targets, and 2) the benefits of nowcasting are uneven, as even in the perfect nowcasting setting, only marginal improvements to forecasts of seasonal targets are possible relative to short-term forecasts. This is because nowcasts provide direct information about short-term targets but only indirect information about seasonal targets. This paper supports previous findings that nowcasts can improve flu forecasting but clarifies the limitations of those improvements, both in terms of magnitude of possible improvement as well as which targets can be improved. The continued advancement of flu forecasting hinges on the development of model improvements separate from nowcasting.

Suggested Citation

  • Dave Osthus & Ashlynn R Daughton & Reid Priedhorsky, 2019. "Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited," PLOS Computational Biology, Public Library of Science, vol. 15(2), pages 1-19, February.
  • Handle: RePEc:plo:pcbi00:1006599
    DOI: 10.1371/journal.pcbi.1006599
    as

    Download full text from publisher

    File URL: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006599
    Download Restriction: no

    File URL: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006599&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pcbi.1006599?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Nicholas Generous & Geoffrey Fairchild & Alina Deshpande & Sara Y Del Valle & Reid Priedhorsky, 2014. "Global Disease Monitoring and Forecasting with Wikipedia," PLOS Computational Biology, Public Library of Science, vol. 10(11), pages 1-16, November.
    2. Logan C Brooks & David C Farrow & Sangwon Hyun & Ryan J Tibshirani & Roni Rosenfeld, 2018. "Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions," PLOS Computational Biology, Public Library of Science, vol. 14(6), pages 1-29, June.
    3. Svitlana Volkova & Ellyn Ayton & Katherine Porterfield & Courtney D Corley, 2017. "Forecasting influenza-like illness dynamics for military populations using neural networks and social media," PLOS ONE, Public Library of Science, vol. 12(12), pages 1-22, December.
    4. Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
    5. Reid Priedhorsky & Ashlynn R Daughton & Martha Barnard & Fiona O’Connell & Dave Osthus, 2019. "Estimating influenza incidence using search query deceptiveness and generalized ridge regression," PLOS Computational Biology, Public Library of Science, vol. 15(10), pages 1-23, October.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Sasikiran Kandula & Jeffrey Shaman, 2019. "Reappraising the utility of Google Flu Trends," PLOS Computational Biology, Public Library of Science, vol. 15(8), pages 1-16, August.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Victor Olsavszky & Mihnea Dosius & Cristian Vladescu & Johannes Benecke, 2020. "Time Series Analysis and Forecasting with Automated Machine Learning on a National ICD-10 Database," IJERPH, MDPI, vol. 17(14), pages 1-17, July.
    2. Kookjin Lee & Jaideep Ray & Cosmin Safta, 2021. "The predictive skill of convolutional neural networks models for disease forecasting," PLOS ONE, Public Library of Science, vol. 16(7), pages 1-26, July.
    3. Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
    4. Rui Wang & Naihua Xiu & Kim-Chuan Toh, 2021. "Subspace quadratic regularization method for group sparse multinomial logistic regression," Computational Optimization and Applications, Springer, vol. 79(3), pages 531-559, July.
    5. Mkhadri, Abdallah & Ouhourane, Mohamed, 2013. "An extended variable inclusion and shrinkage algorithm for correlated variables," Computational Statistics & Data Analysis, Elsevier, vol. 57(1), pages 631-644.
    6. Chen, Le-Yu & Lee, Sokbae, 2018. "Best subset binary prediction," Journal of Econometrics, Elsevier, vol. 206(1), pages 39-56.
    7. Chuliá, Helena & Garrón, Ignacio & Uribe, Jorge M., 2024. "Daily growth at risk: Financial or real drivers? The answer is not always the same," International Journal of Forecasting, Elsevier, vol. 40(2), pages 762-776.
    8. Sung Jae Jun & Sokbae Lee, 2024. "Causal Inference Under Outcome-Based Sampling with Monotonicity Assumptions," Journal of Business & Economic Statistics, Taylor & Francis Journals, vol. 42(3), pages 998-1009, July.
    9. Xiangwei Li & Thomas Delerue & Ben Schöttker & Bernd Holleczek & Eva Grill & Annette Peters & Melanie Waldenberger & Barbara Thorand & Hermann Brenner, 2022. "Derivation and validation of an epigenetic frailty risk score in population-based cohorts of older adults," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    10. Christopher J Greenwood & George J Youssef & Primrose Letcher & Jacqui A Macdonald & Lauryn J Hagg & Ann Sanson & Jenn Mcintosh & Delyse M Hutchinson & John W Toumbourou & Matthew Fuller-Tyszkiewicz &, 2020. "A comparison of penalised regression methods for informing the selection of predictive markers," PLOS ONE, Public Library of Science, vol. 15(11), pages 1-14, November.
    11. Heng Chen & Daniel F. Heitjan, 2022. "Analysis of local sensitivity to nonignorability with missing outcomes and predictors," Biometrics, The International Biometric Society, vol. 78(4), pages 1342-1352, December.
    12. S Ariane Christie & Amanda S Conroy & Rachael A Callcut & Alan E Hubbard & Mitchell J Cohen, 2019. "Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma," PLOS ONE, Public Library of Science, vol. 14(4), pages 1-13, April.
    13. Zhu Wang, 2022. "MM for penalized estimation," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(1), pages 54-75, March.
    14. Ida Kubiszewski & Kenneth Mulder & Diane Jarvis & Robert Costanza, 2022. "Toward better measurement of sustainable development and wellbeing: A small number of SDG indicators reliably predict life satisfaction," Sustainable Development, John Wiley & Sons, Ltd., vol. 30(1), pages 139-148, February.
    15. Gustavo A. Alonso-Silverio & Víctor Francisco-García & Iris P. Guzmán-Guzmán & Elías Ventura-Molina & Antonio Alarcón-Paredes, 2021. "Toward Non-Invasive Estimation of Blood Glucose Concentration: A Comparative Performance," Mathematics, MDPI, vol. 9(20), pages 1-13, October.
    16. Christopher Kath & Florian Ziel, 2018. "The value of forecasts: Quantifying the economic gains of accurate quarter-hourly electricity price forecasts," Papers 1811.08604, arXiv.org.
    17. Naimoli, Antonio, 2022. "Modelling the persistence of Covid-19 positivity rate in Italy," Socio-Economic Planning Sciences, Elsevier, vol. 82(PA).
    18. Gurgul Henryk & Machno Artur, 2017. "Trade Pattern on Warsaw Stock Exchange and Prediction of Number of Trades," Statistics in Transition New Series, Statistics Poland, vol. 18(1), pages 91-114, March.
    19. Ahmed Ismaïl & Hartikainen Anna-Liisa & Järvelin Marjo-Riitta & Richardson Sylvia, 2011. "False Discovery Rate Estimation for Stability Selection: Application to Genome-Wide Association Studies," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-20, November.
    20. Vitaly Meursault & Daniel Moulton & Larry Santucci & Nathan Schor, 2022. "One Threshold Doesn’t Fit All: Tailoring Machine Learning Predictions of Consumer Default for Lower-Income Areas," Working Papers 22-39, Federal Reserve Bank of Philadelphia.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1006599. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.