Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.1003910
Download full text from publisher
References listed on IDEAS
- Claudia van den Berg & Viola Willemsen & Giel Hendriks & Peter Weisbeek & Ben Scheres, 1997. "Short-range control of cell differentiation in the Arabidopsis root meristem," Nature, Nature, vol. 390(6657), pages 287-289, November.
- Verônica A. Grieneisen & Jian Xu & Athanasius F. M. Marée & Paulien Hogeweg & Ben Scheres, 2007. "Auxin transport is sufficient to generate a maximum and gradient guiding root growth," Nature, Nature, vol. 449(7165), pages 1008-1013, October.
- Géraldine Brunoud & Darren M. Wells & Marina Oliva & Antoine Larrieu & Vincent Mirabet & Amy H. Burrow & Tom Beeckman & Stefan Kepinski & Jan Traas & Malcolm J. Bennett & Teva Vernoux, 2012. "A novel sensor to map auxin response and distribution at high spatio-temporal resolution," Nature, Nature, vol. 482(7383), pages 103-106, February.
- Jiří Friml & Anne Vieten & Michael Sauer & Dolf Weijers & Heinz Schwarz & Thorsten Hamann & Remko Offringa & Gerd Jürgens, 2003. "Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis," Nature, Nature, vol. 426(6963), pages 147-153, November.
- Jesse Stricker & Scott Cookson & Matthew R. Bennett & William H. Mather & Lev S. Tsimring & Jeff Hasty, 2008. "A fast, robust and tunable synthetic gene oscillator," Nature, Nature, vol. 456(7221), pages 516-519, November.
- Michael B. Elowitz & Stanislas Leibler, 2000. "A synthetic oscillatory network of transcriptional regulators," Nature, Nature, vol. 403(6767), pages 335-338, January.
- Ikram Blilou & Jian Xu & Marjolein Wildwater & Viola Willemsen & Ivan Paponov & Jiří Friml & Renze Heidstra & Mitsuhiro Aida & Klaus Palme & Ben Scheres, 2005. "The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots," Nature, Nature, vol. 433(7021), pages 39-44, January.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Zhdanov, Vladimir P., 2012. "Periodic perturbation of genetic oscillations," Chaos, Solitons & Fractals, Elsevier, vol. 45(5), pages 577-587.
- Velia Siciliano & Filippo Menolascina & Lucia Marucci & Chiara Fracassi & Immacolata Garzilli & Maria Nicoletta Moretti & Diego di Bernardo, 2011. "Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line," PLOS Computational Biology, Public Library of Science, vol. 7(6), pages 1-11, June.
- Evgeni V Nikolaev & Eduardo D Sontag, 2016. "Quorum-Sensing Synchronization of Synthetic Toggle Switches: A Design Based on Monotone Dynamical Systems Theory," PLOS Computational Biology, Public Library of Science, vol. 12(4), pages 1-33, April.
- Singh, Vijai & Chaudhary, Dharmendra Kumar & Mani, Indra & Dhar, Pawan Kumar, 2016. "Recent advances and challenges of the use of cyanobacteria towards the production of biofuels," Renewable and Sustainable Energy Reviews, Elsevier, vol. 60(C), pages 1-10.
- Samanthe M Lyons & Wenlong Xu & June Medford & Ashok Prasad, 2014. "Loads Bias Genetic and Signaling Switches in Synthetic and Natural Systems," PLOS Computational Biology, Public Library of Science, vol. 10(3), pages 1-16, March.
- Zhou, Peipei & Cai, Shuiming & Liu, Zengrong & Chen, Luonan & Wang, Ruiqi, 2013. "Coupling switches and oscillators as a means to shape cellular signals in biomolecular systems," Chaos, Solitons & Fractals, Elsevier, vol. 50(C), pages 115-126.
- Mitchell P Levesque & Teva Vernoux & Wolfgang Busch & Hongchang Cui & Jean Y Wang & Ikram Blilou & Hala Hassan & Keiji Nakajima & Noritaka Matsumoto & Jan U Lohmann & Ben Scheres & Philip N Benfey, 2006. "Whole-Genome Analysis of the SHORT-ROOT Developmental Pathway in Arabidopsis," PLOS Biology, Public Library of Science, vol. 4(5), pages 1-1, May.
- Lucia Marucci & David A W Barton & Irene Cantone & Maria Aurelia Ricci & Maria Pia Cosma & Stefania Santini & Diego di Bernardo & Mario di Bernardo, 2009. "How to Turn a Genetic Circuit into a Synthetic Tunable Oscillator, or a Bistable Switch," PLOS ONE, Public Library of Science, vol. 4(12), pages 1-10, December.
- Miles Miller & Marc Hafner & Eduardo Sontag & Noah Davidsohn & Sairam Subramanian & Priscilla E M Purnick & Douglas Lauffenburger & Ron Weiss, 2012. "Modular Design of Artificial Tissue Homeostasis: Robust Control through Synthetic Cellular Heterogeneity," PLOS Computational Biology, Public Library of Science, vol. 8(7), pages 1-18, July.
- Oliver Purcell & Mario di Bernardo & Claire S Grierson & Nigel J Savery, 2011. "A Multi-Functional Synthetic Gene Network: A Frequency Multiplier, Oscillator and Switch," PLOS ONE, Public Library of Science, vol. 6(2), pages 1-12, February.
- Luna Rizik & Loai Danial & Mouna Habib & Ron Weiss & Ramez Daniel, 2022. "Synthetic neuromorphic computing in living cells," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Jin Wang & Bo Huang & Xuefeng Xia & Zhirong Sun, 2006. "Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle," PLOS Computational Biology, Public Library of Science, vol. 2(11), pages 1-10, November.
- Giovanni Russo & Mario di Bernardo & Eduardo D Sontag, 2010. "Global Entrainment of Transcriptional Systems to Periodic Inputs," PLOS Computational Biology, Public Library of Science, vol. 6(4), pages 1-26, April.
- Yetkin Çaka Ince & Johanna Krahmer & Anne-Sophie Fiorucci & Martine Trevisan & Vinicius Costa Galvão & Leonore Wigger & Sylvain Pradervand & Laetitia Fouillen & Pierre Delft & Manon Genva & Sebastien , 2022. "A combination of plasma membrane sterol biosynthesis and autophagy is required for shade-induced hypocotyl elongation," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Avraham E Mayo & Yaakov Setty & Seagull Shavit & Alon Zaslaver & Uri Alon, 2006. "Plasticity of the cis-Regulatory Input Function of a Gene," PLOS Biology, Public Library of Science, vol. 4(4), pages 1-1, March.
- Ankit Gupta & Mustafa Khammash, 2022. "Frequency spectra and the color of cellular noise," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Ci Kong & Yin Yang & Tiancong Qi & Shuyi Zhang, 2025. "Predictive genetic circuit design for phenotype reprogramming in plants," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
- Bottani, Samuel & Grammaticos, Basile, 2008. "A simple model of genetic oscillations through regulated degradation," Chaos, Solitons & Fractals, Elsevier, vol. 38(5), pages 1468-1482.
- Margherita Carletti & Malay Banerjee, 2019. "A Backward Technique for Demographic Noise in Biological Ordinary Differential Equation Models," Mathematics, MDPI, vol. 7(12), pages 1-16, December.
- Simon van Mourik & Kerstin Kaufmann & Aalt D J van Dijk & Gerco C Angenent & Roeland M H Merks & Jaap Molenaar, 2012. "Simulation of Organ Patterning on the Floral Meristem Using a Polar Auxin Transport Model," PLOS ONE, Public Library of Science, vol. 7(1), pages 1-9, January.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1003910. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.