Quorum-Sensing Synchronization of Synthetic Toggle Switches: A Design Based on Monotone Dynamical Systems Theory
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DOI: 10.1371/journal.pcbi.1004881
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References listed on IDEAS
- Yi-Hu Dong & Lian-Hui Wang & Jin-Ling Xu & Hai-Bao Zhang & Xi-Fen Zhang & Lian-Hui Zhang, 2001. "Quenching quorum-sensing-dependent bacterial infection by an N-acyl homoserine lactonase," Nature, Nature, vol. 411(6839), pages 813-817, June.
- Ramiz Daniel & Jacob R. Rubens & Rahul Sarpeshkar & Timothy K. Lu, 2013. "Synthetic analog computation in living cells," Nature, Nature, vol. 497(7451), pages 619-623, May.
- Jesse Stricker & Scott Cookson & Matthew R. Bennett & William H. Mather & Lev S. Tsimring & Jeff Hasty, 2008. "A fast, robust and tunable synthetic gene oscillator," Nature, Nature, vol. 456(7221), pages 516-519, November.
- Michael B. Elowitz & Stanislas Leibler, 2000. "A synthetic oscillatory network of transcriptional regulators," Nature, Nature, vol. 403(6767), pages 335-338, January.
- Timothy S. Gardner & Charles R. Cantor & James J. Collins, 2000. "Construction of a genetic toggle switch in Escherichia coli," Nature, Nature, vol. 403(6767), pages 339-342, January.
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Cited by:
- Jamiree Harrison & Enoch Yeung, 2021. "Stability Analysis of Parameter Varying Genetic Toggle Switches Using Koopman Operators," Mathematics, MDPI, vol. 9(23), pages 1-25, December.
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