Environments that Induce Synthetic Microbial Ecosystems
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.1001002
Download full text from publisher
References listed on IDEAS
- Markus W. Covert & Eric M. Knight & Jennifer L. Reed & Markus J. Herrgard & Bernhard O. Palsson, 2004. "Integrating high-throughput and computational data elucidates bacterial networks," Nature, Nature, vol. 429(6987), pages 92-96, May.
- Antje Boetius & Katrin Ravenschlag & Carsten J. Schubert & Dirk Rickert & Friedrich Widdel & Armin Gieseke & Rudolf Amann & Bo Barker Jørgensen & Ursula Witte & Olaf Pfannkuche, 2000. "A marine microbial consortium apparently mediating anaerobic oxidation of methane," Nature, Nature, vol. 407(6804), pages 623-626, October.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Wenwen Diao & Liang Guo & Qiang Ding & Cong Gao & Guipeng Hu & Xiulai Chen & Yang Li & Linpei Zhang & Wei Chen & Jian Chen & Liming Liu, 2021. "Reprogramming microbial populations using a programmed lysis system to improve chemical production," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Simeon D. Castle & Michiel Stock & Thomas E. Gorochowski, 2024. "Engineering is evolution: a perspective on design processes to engineer biology," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Li Xie & Wenying Shou, 2021. "Steering ecological-evolutionary dynamics to improve artificial selection of microbial communities," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
- Kumar P Mainali & Sharon Bewick & Peter Thielen & Thomas Mehoke & Florian P Breitwieser & Shishir Paudel & Arjun Adhikari & Joshua Wolfe & Eric V Slud & David Karig & William F Fagan, 2017. "Statistical analysis of co-occurrence patterns in microbial presence-absence datasets," PLOS ONE, Public Library of Science, vol. 12(11), pages 1-21, November.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Daidai Wu & Tiantian Sun & Rui Xie & Mengdi Pan & Xuegang Chen & Ying Ye & Lihua Liu & Nengyou Wu, 2019. "Characteristics of Authigenic Minerals around the Sulfate-Methane Transition Zone in the Methane-Rich Sediments of the Northern South China Sea: Inorganic Geochemical Evidence," IJERPH, MDPI, vol. 16(13), pages 1-18, June.
- Richard B. Coffin & Leila J. Hamdan & Joseph P. Smith & Paula S. Rose & Rebecca E. Plummer & Brandon Yoza & Ingo Pecher & Michael T. Montgomery, 2014. "Contribution of Vertical Methane Flux to Shallow Sediment Carbon Pools across Porangahau Ridge, New Zealand," Energies, MDPI, vol. 7(8), pages 1-25, August.
- Maria De La Fuente & Sandra Arndt & Héctor Marín-Moreno & Tim A. Minshull, 2022. "Assessing the Benthic Response to Climate-Driven Methane Hydrate Destabilisation: State of the Art and Future Modelling Perspectives," Energies, MDPI, vol. 15(9), pages 1-32, May.
- Yunru Chen & Liang Dong & Weikang Sui & Mingyang Niu & Xingqian Cui & Kai-Uwe Hinrichs & Fengping Wang, 2024. "Cycling and persistence of iron-bound organic carbon in subseafloor sediments," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Pan-Jun Kim & Nathan D Price, 2011. "Genetic Co-Occurrence Network across Sequenced Microbes," PLOS Computational Biology, Public Library of Science, vol. 7(12), pages 1-9, December.
- Klaus Wallmann & Elena Pinero & Ewa Burwicz & Matthias Haeckel & Christian Hensen & Andrew Dale & Lars Ruepke, 2012. "The Global Inventory of Methane Hydrate in Marine Sediments: A Theoretical Approach," Energies, MDPI, vol. 5(7), pages 1-50, July.
- Cheemeng Tan & Robert Phillip Smith & Ming-Chi Tsai & Russell Schwartz & Lingchong You, 2014. "Phenotypic Signatures Arising from Unbalanced Bacterial Growth," PLOS Computational Biology, Public Library of Science, vol. 10(8), pages 1-10, August.
- Joel A Paulson & Marc Martin-Casas & Ali Mesbah, 2019. "Fast uncertainty quantification for dynamic flux balance analysis using non-smooth polynomial chaos expansions," PLOS Computational Biology, Public Library of Science, vol. 15(8), pages 1-35, August.
- Mengxiong Wu & Jie Li & Andy O. Leu & Dirk V. Erler & Terra Stark & Gene W. Tyson & Zhiguo Yuan & Simon J. McIlroy & Jianhua Guo, 2022. "Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Jarrod J Scott & John A Breier & George W Luther III & David Emerson, 2015. "Microbial Iron Mats at the Mid-Atlantic Ridge and Evidence that Zetaproteobacteria May Be Restricted to Iron-Oxidizing Marine Systems," PLOS ONE, Public Library of Science, vol. 10(3), pages 1-19, March.
- Jeremiah J Faith & Boris Hayete & Joshua T Thaden & Ilaria Mogno & Jamey Wierzbowski & Guillaume Cottarel & Simon Kasif & James J Collins & Timothy S Gardner, 2007. "Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles," PLOS Biology, Public Library of Science, vol. 5(1), pages 1-13, January.
- Eamon Duede & Victor Zhorin, 2016. "Convergence of Economic Growth and the Great Recession as Seen From a Celestial Observatory," Papers 1604.04312, arXiv.org, revised Aug 2016.
- Markus Maucher & David Kracht & Steffen Schober & Martin Bossert & Hans Kestler, 2014. "Inferring Boolean functions via higher-order correlations," Computational Statistics, Springer, vol. 29(1), pages 97-115, February.
- Scott A Becker & Bernhard O Palsson, 2008. "Context-Specific Metabolic Networks Are Consistent with Experiments," PLOS Computational Biology, Public Library of Science, vol. 4(5), pages 1-10, May.
- Min Luo & Linying Chen & Hongpeng Tong & Wen Yan & Duofu Chen, 2014. "Gas Hydrate Occurrence Inferred from Dissolved Cl − Concentrations and δ 18 O Values of Pore Water and Dissolved Sulfate in the Shallow Sediments of the Pockmark Field in Southwestern Xisha Uplift, No," Energies, MDPI, vol. 7(6), pages 1-14, June.
- Kumar, Vikas & Nabaterega, Resty & Khoei, Shiva & Eskicioglu, Cigdem, 2021. "Insight into interactions between syntrophic bacteria and archaea in anaerobic digestion amended with conductive materials," Renewable and Sustainable Energy Reviews, Elsevier, vol. 144(C).
- Xiyang Dong & Yongyi Peng & Muhua Wang & Laura Woods & Wenxue Wu & Yong Wang & Xi Xiao & Jiwei Li & Kuntong Jia & Chris Greening & Zongze Shao & Casey R. J. Hubert, 2023. "Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Richard B. Coffin & Christopher L. Osburn & Rebecca E. Plummer & Joseph P. Smith & Paula S. Rose & Kenneth S. Grabowski, 2015. "Deep Sediment-Sourced Methane Contribution to Shallow Sediment Organic Carbon: Atwater Valley, Texas-Louisiana Shelf, Gulf of Mexico," Energies, MDPI, vol. 8(3), pages 1-23, February.
- Heleen T. Ouboter & Rob Mesman & Tom Sleutels & Jelle Postma & Martijn Wissink & Mike S. M. Jetten & Annemiek Ter Heijne & Tom Berben & Cornelia U. Welte, 2024. "Mechanisms of extracellular electron transfer in anaerobic methanotrophic archaea," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Xueqin Zhang & Georgina H. Joyce & Andy O. Leu & Jing Zhao & Hesamoddin Rabiee & Bernardino Virdis & Gene W. Tyson & Zhiguo Yuan & Simon J. McIlroy & Shihu Hu, 2023. "Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph ‘Candidatus Methanoperedens nitroreducens’," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1001002. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.