Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps
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DOI: 10.1038/s41467-023-36877-3
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- Chirag Jain & Luis M. Rodriguez-R & Adam M. Phillippy & Konstantinos T. Konstantinidis & Srinivas Aluru, 2018. "High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
- Siegfried Schloissnig & Manimozhiyan Arumugam & Shinichi Sunagawa & Makedonka Mitreva & Julien Tap & Ana Zhu & Alison Waller & Daniel R. Mende & Jens Roat Kultima & John Martin & Karthik Kota & Shamil, 2013. "Genomic variation landscape of the human gut microbiome," Nature, Nature, vol. 493(7430), pages 45-50, January.
- Rika E. Anderson & Julie Reveillaud & Emily Reddington & Tom O. Delmont & A. Murat Eren & Jill M. McDermott & Jeff S. Seewald & Julie A. Huber, 2017. "Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
- Xiyang Dong & Jayne E. Rattray & D. Calvin Campbell & Jamie Webb & Anirban Chakraborty & Oyeboade Adebayo & Stuart Matthews & Carmen Li & Martin Fowler & Natasha M. Morrison & Adam MacDonald & Ryan A., 2020. "Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
- Luis Pedro Coelho & Renato Alves & Álvaro Rodríguez Río & Pernille Neve Myers & Carlos P. Cantalapiedra & Joaquín Giner-Lamia & Thomas Sebastian Schmidt & Daniel R. Mende & Askarbek Orakov & Ivica Let, 2022. "Towards the biogeography of prokaryotic genes," Nature, Nature, vol. 601(7892), pages 252-256, January.
- Antje Boetius & Katrin Ravenschlag & Carsten J. Schubert & Dirk Rickert & Friedrich Widdel & Armin Gieseke & Rudolf Amann & Bo Barker Jørgensen & Ursula Witte & Olaf Pfannkuche, 2000. "A marine microbial consortium apparently mediating anaerobic oxidation of methane," Nature, Nature, vol. 407(6804), pages 623-626, October.
- Xiyang Dong & Chris Greening & Jayne E. Rattray & Anirban Chakraborty & Maria Chuvochina & Daisuke Mayumi & Jan Dolfing & Carmen Li & James M. Brooks & Bernie B. Bernard & Ryan A. Groves & Ian A. Lewi, 2019. "Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
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