Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-023-36877-3
Download full text from publisher
References listed on IDEAS
- Chirag Jain & Luis M. Rodriguez-R & Adam M. Phillippy & Konstantinos T. Konstantinidis & Srinivas Aluru, 2018. "High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
- Siegfried Schloissnig & Manimozhiyan Arumugam & Shinichi Sunagawa & Makedonka Mitreva & Julien Tap & Ana Zhu & Alison Waller & Daniel R. Mende & Jens Roat Kultima & John Martin & Karthik Kota & Shamil, 2013. "Genomic variation landscape of the human gut microbiome," Nature, Nature, vol. 493(7430), pages 45-50, January.
- Rika E. Anderson & Julie Reveillaud & Emily Reddington & Tom O. Delmont & A. Murat Eren & Jill M. McDermott & Jeff S. Seewald & Julie A. Huber, 2017. "Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
- Xiyang Dong & Jayne E. Rattray & D. Calvin Campbell & Jamie Webb & Anirban Chakraborty & Oyeboade Adebayo & Stuart Matthews & Carmen Li & Martin Fowler & Natasha M. Morrison & Adam MacDonald & Ryan A., 2020. "Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
- Luis Pedro Coelho & Renato Alves & Álvaro Rodríguez Río & Pernille Neve Myers & Carlos P. Cantalapiedra & Joaquín Giner-Lamia & Thomas Sebastian Schmidt & Daniel R. Mende & Askarbek Orakov & Ivica Let, 2022. "Towards the biogeography of prokaryotic genes," Nature, Nature, vol. 601(7892), pages 252-256, January.
- Antje Boetius & Katrin Ravenschlag & Carsten J. Schubert & Dirk Rickert & Friedrich Widdel & Armin Gieseke & Rudolf Amann & Bo Barker Jørgensen & Ursula Witte & Olaf Pfannkuche, 2000. "A marine microbial consortium apparently mediating anaerobic oxidation of methane," Nature, Nature, vol. 407(6804), pages 623-626, October.
- Xiyang Dong & Chris Greening & Jayne E. Rattray & Anirban Chakraborty & Maria Chuvochina & Daisuke Mayumi & Jan Dolfing & Carmen Li & James M. Brooks & Bernie B. Bernard & Ryan A. Groves & Ian A. Lewi, 2019. "Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Xiyang Dong & Chuwen Zhang & Yongyi Peng & Hong-Xi Zhang & Ling-Dong Shi & Guangshan Wei & Casey R. J. Hubert & Yong Wang & Chris Greening, 2022. "Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Shaojun Pan & Chengkai Zhu & Xing-Ming Zhao & Luis Pedro Coelho, 2022. "A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Daidai Wu & Tiantian Sun & Rui Xie & Mengdi Pan & Xuegang Chen & Ying Ye & Lihua Liu & Nengyou Wu, 2019. "Characteristics of Authigenic Minerals around the Sulfate-Methane Transition Zone in the Methane-Rich Sediments of the Northern South China Sea: Inorganic Geochemical Evidence," IJERPH, MDPI, vol. 16(13), pages 1-18, June.
- Richard B. Coffin & Leila J. Hamdan & Joseph P. Smith & Paula S. Rose & Rebecca E. Plummer & Brandon Yoza & Ingo Pecher & Michael T. Montgomery, 2014. "Contribution of Vertical Methane Flux to Shallow Sediment Carbon Pools across Porangahau Ridge, New Zealand," Energies, MDPI, vol. 7(8), pages 1-25, August.
- Maria De La Fuente & Sandra Arndt & Héctor Marín-Moreno & Tim A. Minshull, 2022. "Assessing the Benthic Response to Climate-Driven Methane Hydrate Destabilisation: State of the Art and Future Modelling Perspectives," Energies, MDPI, vol. 15(9), pages 1-32, May.
- Zhi-Ping Zhong & Jingjie Du & Stephan Köstlbacher & Petra Pjevac & Sandi Orlić & Matthew B. Sullivan, 2024. "Viral potential to modulate microbial methane metabolism varies by habitat," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Max E. Schön & Vasily V. Zlatogursky & Rohan P. Singh & Camille Poirier & Susanne Wilken & Varsha Mathur & Jürgen F. H. Strassert & Jarone Pinhassi & Alexandra Z. Worden & Patrick J. Keeling & Thijs J, 2021. "Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Yunru Chen & Liang Dong & Weikang Sui & Mingyang Niu & Xingqian Cui & Kai-Uwe Hinrichs & Fengping Wang, 2024. "Cycling and persistence of iron-bound organic carbon in subseafloor sediments," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Nenad Macesic & Jane Hawkey & Ben Vezina & Jessica A. Wisniewski & Hugh Cottingham & Luke V. Blakeway & Taylor Harshegyi & Katherine Pragastis & Gnei Zweena Badoordeen & Amanda Dennison & Denis W. Spe, 2023. "Genomic dissection of endemic carbapenem resistance reveals metallo-beta-lactamase dissemination through clonal, plasmid and integron transfer," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Minghui Cheng & Yingjie Xu & Xiao Cui & Xin Wei & Yundi Chang & Jun Xu & Cheng Lei & Lei Xue & Yifan Zheng & Zhang Wang & Lingtong Huang & Min Zheng & Hong Luo & Yuxin Leng & Chao Jiang, 2024. "Deep longitudinal lower respiratory tract microbiome profiling reveals genome-resolved functional and evolutionary dynamics in critical illness," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Jean-Sebastien Gounot & Minghao Chia & Denis Bertrand & Woei-Yuh Saw & Aarthi Ravikrishnan & Adrian Low & Yichen Ding & Amanda Hui Qi Ng & Linda Wei Lin Tan & Yik-Ying Teo & Henning Seedorf & Niranjan, 2022. "Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Vincent Somerville & Nadine Thierer & Remo S. Schmidt & Alexandra Roetschi & Lauriane Braillard & Monika Haueter & Hélène Berthoud & Noam Shani & Ueli Ah & Florent Mazel & Philipp Engel, 2024. "Genomic and phenotypic imprints of microbial domestication on cheese starter cultures," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Xianzhe Gong & Álvaro Rodríguez Río & Le Xu & Zhiyi Chen & Marguerite V. Langwig & Lei Su & Mingxue Sun & Jaime Huerta-Cepas & Valerie Anda & Brett J. Baker, 2022. "New globally distributed bacterial phyla within the FCB superphylum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Jordy Evan Sulaiman & Jaron Thompson & Yili Qian & Eugenio I. Vivas & Christian Diener & Sean M. Gibbons & Nasia Safdar & Ophelia S. Venturelli, 2024. "Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Klaus Wallmann & Elena Pinero & Ewa Burwicz & Matthias Haeckel & Christian Hensen & Andrew Dale & Lars Ruepke, 2012. "The Global Inventory of Methane Hydrate in Marine Sediments: A Theoretical Approach," Energies, MDPI, vol. 5(7), pages 1-50, July.
- M. C. Rühlemann & C. Bang & J. F. Gogarten & B. M. Hermes & M. Groussin & S. Waschina & M. Poyet & M. Ulrich & C. Akoua-Koffi & T. Deschner & J. J. Muyembe-Tamfum & M. M. Robbins & M. Surbeck & R. M. , 2024. "Functional host-specific adaptation of the intestinal microbiome in hominids," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Ruobing Wang & Anru Zhang & Shijun Sun & Guankun Yin & Xingyu Wu & Qi Ding & Qi Wang & Fengning Chen & Shuyi Wang & Lucy Dorp & Yawei Zhang & Longyang Jin & Xiaojuan Wang & Francois Balloux & Hui Wang, 2024. "Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Lucas Serra Moncadas & Cyrill Hofer & Paul-Adrian Bulzu & Jakob Pernthaler & Adrian-Stefan Andrei, 2024. "Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Nils Giordano & Marinna Gaudin & Camille Trottier & Erwan Delage & Charlotte Nef & Chris Bowler & Samuel Chaffron, 2024. "Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Ling Zhong & Menghan Zhang & Libing Sun & Yu Yang & Bo Wang & Haibing Yang & Qiang Shen & Yu Xia & Jiarui Cui & Hui Hang & Yi Ren & Bo Pang & Xiangyu Deng & Yahui Zhan & Heng Li & Zhemin Zhou, 2023. "Distributed genotyping and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36877-3. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.