Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli
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DOI: 10.1371/journal.pbio.1000115
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- Markus W. Covert & Eric M. Knight & Jennifer L. Reed & Markus J. Herrgard & Bernhard O. Palsson, 2004. "Integrating high-throughput and computational data elucidates bacterial networks," Nature, Nature, vol. 429(6987), pages 92-96, May.
- John R. S. Newman & Sina Ghaemmaghami & Jan Ihmels & David K. Breslow & Matthew Noble & Joseph L. DeRisi & Jonathan S. Weissman, 2006. "Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise," Nature, Nature, vol. 441(7095), pages 840-846, June.
- Arjun Raj & Charles S Peskin & Daniel Tranchina & Diana Y Vargas & Sanjay Tyagi, 2006. "Stochastic mRNA Synthesis in Mammalian Cells," PLOS Biology, Public Library of Science, vol. 4(10), pages 1-13, September.
- Long Cai & Nir Friedman & X. Sunney Xie, 2006. "Stochastic protein expression in individual cells at the single molecule level," Nature, Nature, vol. 440(7082), pages 358-362, March.
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