Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-024-53829-7
Download full text from publisher
References listed on IDEAS
- Caitlin N. Spaulding & Roger D. Klein & Ségolène Ruer & Andrew L. Kau & Henry L. Schreiber & Zachary T. Cusumano & Karen W. Dodson & Jerome S. Pinkner & Daved H. Fremont & James W. Janetka & Han Remau, 2017. "Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist," Nature, Nature, vol. 546(7659), pages 528-532, June.
- Leland Wilkinson, 2011. "ggplot2: Elegant Graphics for Data Analysis by WICKHAM, H," Biometrics, The International Biometric Society, vol. 67(2), pages 678-679, June.
- Michael D. Valentino & Abigail Manson McGuire & Jason W. Rosch & Paulo J. M. Bispo & Corinna Burnham & Christine M. Sanfilippo & Robert A. Carter & Michael E. Zegans & Bernard Beall & Ashlee M. Earl &, 2014. "Unencapsulated Streptococcus pneumoniae from conjunctivitis encode variant traits and belong to a distinct phylogenetic cluster," Nature Communications, Nature, vol. 5(1), pages 1-12, December.
- Charles R. Harris & K. Jarrod Millman & Stéfan J. Walt & Ralf Gommers & Pauli Virtanen & David Cournapeau & Eric Wieser & Julian Taylor & Sebastian Berg & Nathaniel J. Smith & Robert Kern & Matti Picu, 2020. "Array programming with NumPy," Nature, Nature, vol. 585(7825), pages 357-362, September.
- Peter J. Turnbaugh & Ruth E. Ley & Michael A. Mahowald & Vincent Magrini & Elaine R. Mardis & Jeffrey I. Gordon, 2006. "An obesity-associated gut microbiome with increased capacity for energy harvest," Nature, Nature, vol. 444(7122), pages 1027-1031, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Geeraert, Joke & Rocha, Luis E.C. & Vandeviver, Christophe, 2024. "The impact of violent behavior on co-offender selection: Evidence of behavioral homophily," Journal of Criminal Justice, Elsevier, vol. 94(C).
- Furqan Dar & Samuel R. Cohen & Diana M. Mitrea & Aaron H. Phillips & Gergely Nagy & Wellington C. Leite & Christopher B. Stanley & Jeong-Mo Choi & Richard W. Kriwacki & Rohit V. Pappu, 2024. "Biomolecular condensates form spatially inhomogeneous network fluids," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- López Pérez, Mario & Mansilla Corona, Ricardo, 2022. "Ordinal synchronization and typical states in high-frequency digital markets," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 598(C).
- Paul A Roberts & Ryan M Huebinger & Emma Keen & Anne-Marie Krachler & Sara Jabbari, 2018. "Predictive modelling of a novel anti-adhesion therapy to combat bacterial colonisation of burn wounds," PLOS Computational Biology, Public Library of Science, vol. 14(5), pages 1-28, May.
- Aqilah Amran & Lara Pigatto & Johanna Farley & Rasoul Godini & Roger Pocock & Sandeep Gopal, 2024. "The matrisome landscape controlling in vivo germ cell fates," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Jessica M. Vanslambrouck & Sean B. Wilson & Ker Sin Tan & Ella Groenewegen & Rajeev Rudraraju & Jessica Neil & Kynan T. Lawlor & Sophia Mah & Michelle Scurr & Sara E. Howden & Kanta Subbarao & Melissa, 2022. "Enhanced metanephric specification to functional proximal tubule enables toxicity screening and infectious disease modelling in kidney organoids," Nature Communications, Nature, vol. 13(1), pages 1-23, December.
- Dennis Bontempi & Leonard Nuernberg & Suraj Pai & Deepa Krishnaswamy & Vamsi Thiriveedhi & Ahmed Hosny & Raymond H. Mak & Keyvan Farahani & Ron Kikinis & Andrey Fedorov & Hugo J. W. L. Aerts, 2024. "End-to-end reproducible AI pipelines in radiology using the cloud," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
- Pablo García-Risueño, 2025. "Historical Simulation Systematically Underestimates the Expected Shortfall," JRFM, MDPI, vol. 18(1), pages 1-12, January.
- Lauren L. Porter & Allen K. Kim & Swechha Rimal & Loren L. Looger & Ananya Majumdar & Brett D. Mensh & Mary R. Starich & Marie-Paule Strub, 2022. "Many dissimilar NusG protein domains switch between α-helix and β-sheet folds," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Oren Amsalem & Hidehiko Inagaki & Jianing Yu & Karel Svoboda & Ran Darshan, 2024. "Sub-threshold neuronal activity and the dynamical regime of cerebral cortex," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Matthew Rosenblatt & Link Tejavibulya & Rongtao Jiang & Stephanie Noble & Dustin Scheinost, 2024. "Data leakage inflates prediction performance in connectome-based machine learning models," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Sayedali Shetab Boushehri & Katharina Essig & Nikolaos-Kosmas Chlis & Sylvia Herter & Marina Bacac & Fabian J. Theis & Elke Glasmacher & Carsten Marr & Fabian Schmich, 2023. "Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Kiran Konain & Sadia & Turfa Nadeem & Adeed Khan & Warda Iqbal & Arsalan & Amir Javed & Ruby Khan & Kainat Jamil & Kainat Jamil, 2018. "Importance of Probiotics in Gastrointestinal Tract," Journal of Asian Scientific Research, Asian Economic and Social Society, vol. 8(3), pages 128-143, March.
- Marjolein Heddes & Baraa Altaha & Yunhui Niu & Sandra Reitmeier & Karin Kleigrewe & Dirk Haller & Silke Kiessling, 2022. "The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Khaled Akkad & David He, 2023. "A dynamic mode decomposition based deep learning technique for prognostics," Journal of Intelligent Manufacturing, Springer, vol. 34(5), pages 2207-2224, June.
- Romain Fournier & Zoi Tsangalidou & David Reich & Pier Francesco Palamara, 2023. "Haplotype-based inference of recent effective population size in modern and ancient DNA samples," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Matt C. J. Denton & Luke D. Smith & Wenhao Xu & Jodeci Pugsley & Amelia Toghill & Daniel R. Kattnig, 2024. "Magnetosensitivity of tightly bound radical pairs in cryptochrome is enabled by the quantum Zeno effect," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Laura Portell & Sergi Morera & Helena Ramalhinho, 2022. "Door-to-Door Transportation Services for Reduced Mobility Population: A Descriptive Analytics of the City of Barcelona," IJERPH, MDPI, vol. 19(8), pages 1-20, April.
- Caroline Haimerl & Douglas A. Ruff & Marlene R. Cohen & Cristina Savin & Eero P. Simoncelli, 2023. "Targeted V1 comodulation supports task-adaptive sensory decisions," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Pullinger, Martin & Zapata-Webborn, Ellen & Kilgour, Jonathan & Elam, Simon & Few, Jessica & Goddard, Nigel & Hanmer, Clare & McKenna, Eoghan & Oreszczyn, Tadj & Webb, Lynda, 2024. "Capturing variation in daily energy demand profiles over time with cluster analysis in British homes (September 2019 – August 2022)," Applied Energy, Elsevier, vol. 360(C).
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-53829-7. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.