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End-to-end reproducible AI pipelines in radiology using the cloud

Author

Listed:
  • Dennis Bontempi

    (Harvard Medical School
    Maastricht University
    Harvard Medical School)

  • Leonard Nuernberg

    (Harvard Medical School
    Maastricht University
    Harvard Medical School)

  • Suraj Pai

    (Harvard Medical School
    Maastricht University
    Harvard Medical School)

  • Deepa Krishnaswamy

    (Harvard Medical School)

  • Vamsi Thiriveedhi

    (Harvard Medical School)

  • Ahmed Hosny

    (Harvard Medical School
    Harvard Medical School)

  • Raymond H. Mak

    (Harvard Medical School
    Harvard Medical School)

  • Keyvan Farahani

    (National Heart, Lung, and Blood Institute, National Institutes of Health)

  • Ron Kikinis

    (Harvard Medical School)

  • Andrey Fedorov

    (Harvard Medical School)

  • Hugo J. W. L. Aerts

    (Harvard Medical School
    Maastricht University
    Harvard Medical School)

Abstract

Artificial intelligence (AI) algorithms hold the potential to revolutionize radiology. However, a significant portion of the published literature lacks transparency and reproducibility, which hampers sustained progress toward clinical translation. Although several reporting guidelines have been proposed, identifying practical means to address these issues remains challenging. Here, we show the potential of cloud-based infrastructure for implementing and sharing transparent and reproducible AI-based radiology pipelines. We demonstrate end-to-end reproducibility from retrieving cloud-hosted data, through data pre-processing, deep learning inference, and post-processing, to the analysis and reporting of the final results. We successfully implement two distinct use cases, starting from recent literature on AI-based biomarkers for cancer imaging. Using cloud-hosted data and computing, we confirm the findings of these studies and extend the validation to previously unseen data for one of the use cases. Furthermore, we provide the community with transparent and easy-to-extend examples of pipelines impactful for the broader oncology field. Our approach demonstrates the potential of cloud resources for implementing, sharing, and using reproducible and transparent AI pipelines, which can accelerate the translation into clinical solutions.

Suggested Citation

  • Dennis Bontempi & Leonard Nuernberg & Suraj Pai & Deepa Krishnaswamy & Vamsi Thiriveedhi & Ahmed Hosny & Raymond H. Mak & Keyvan Farahani & Ron Kikinis & Andrey Fedorov & Hugo J. W. L. Aerts, 2024. "End-to-end reproducible AI pipelines in radiology using the cloud," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-51202-2
    DOI: 10.1038/s41467-024-51202-2
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    References listed on IDEAS

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