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Increased DNA damage in full-grown oocytes is correlated with diminished autophagy activation

Author

Listed:
  • Fei Sun

    (University of Missouri)

  • Nourhan Nashat Ali

    (University of Missouri
    Assiut University)

  • Daniela Londoño-Vásquez

    (University of Missouri)

  • Constantine A. Simintiras

    (Louisiana State University)

  • Huanyu Qiao

    (University of Illinois at Urbana-Champaign)

  • M. Sofia Ortega

    (University of Wisconsin-Madison)

  • Yuksel Agca

    (University of Missouri)

  • Masashi Takahashi

    (Hokkaido University)

  • Rocío M. Rivera

    (University of Missouri)

  • Andrew M. Kelleher

    (University of Missouri)

  • Peter Sutovsky

    (University of Missouri
    University of Missouri)

  • Amanda L. Patterson

    (University of Missouri
    University of Missouri)

  • Ahmed Z. Balboula

    (University of Missouri)

Abstract

Unlike mild DNA damage exposure, DNA damage repair (DDR) is reported to be ineffective in full-grown mammalian oocytes exposed to moderate or severe DNA damage. The underlying mechanisms of this weakened DDR are unknown. Here, we show that moderate DNA damage in full-grown oocytes leads to aneuploidy. Our data reveal that DNA-damaged oocytes have an altered, closed, chromatin state, and suggest that the failure to repair damaged DNA could be due to the inability of DDR proteins to access damaged loci. Our data also demonstrate that, unlike somatic cells, mouse and porcine oocytes fail to activate autophagy in response to DNA double-strand break-inducing treatment, which we suggest may be the cause of the altered chromatin conformation and inefficient DDR. Importantly, autophagy activity is further reduced in maternally aged oocytes (which harbor severe DNA damage), and its induction is correlated with reduced DNA damage in maternally aged oocytes. Our findings provide evidence that reduced autophagy activation contributes to weakened DDR in oocytes, especially in those from aged females, offering new possibilities to improve assisted reproductive therapy in women with compromised oocyte quality.

Suggested Citation

  • Fei Sun & Nourhan Nashat Ali & Daniela Londoño-Vásquez & Constantine A. Simintiras & Huanyu Qiao & M. Sofia Ortega & Yuksel Agca & Masashi Takahashi & Rocío M. Rivera & Andrew M. Kelleher & Peter Suto, 2024. "Increased DNA damage in full-grown oocytes is correlated with diminished autophagy activation," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-53559-w
    DOI: 10.1038/s41467-024-53559-w
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    References listed on IDEAS

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    1. Petros Marangos & Michelle Stevense & Konstantina Niaka & Michaela Lagoudaki & Ibtissem Nabti & Rolf Jessberger & John Carroll, 2015. "DNA damage-induced metaphase I arrest is mediated by the spindle assembly checkpoint and maternal age," Nature Communications, Nature, vol. 6(1), pages 1-10, December.
    2. Taichi Hara & Kenji Nakamura & Makoto Matsui & Akitsugu Yamamoto & Yohko Nakahara & Rika Suzuki-Migishima & Minesuke Yokoyama & Kenji Mishima & Ichiro Saito & Hideyuki Okano & Noboru Mizushima, 2006. "Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice," Nature, Nature, vol. 441(7095), pages 885-889, June.
    3. Allison P. Siegenfeld & Shelby A. Roseman & Heejin Roh & Nicholas Z. Lue & Corin C. Wagen & Eric Zhou & Sarah E. Johnstone & Martin J. Aryee & Brian B. Liau, 2022. "Polycomb-lamina antagonism partitions heterochromatin at the nuclear periphery," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    4. Cuifang Liu & Juan Yu & Aoqun Song & Min Wang & Jiansen Hu & Ping Chen & Jicheng Zhao & Guohong Li, 2023. "Histone H1 facilitates restoration of H3K27me3 during DNA replication by chromatin compaction," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    5. Wenfei Jin & Qingsong Tang & Mimi Wan & Kairong Cui & Yi Zhang & Gang Ren & Bing Ni & Jeffrey Sklar & Teresa M. Przytycka & Richard Childs & David Levens & Keji Zhao, 2015. "Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples," Nature, Nature, vol. 528(7580), pages 142-146, December.
    6. Eun-Kyung Suh & Annie Yang & Arminja Kettenbach & Casimir Bamberger & Ala H. Michaelis & Zhou Zhu & Julia A. Elvin & Roderick T. Bronson & Christopher P. Crum & Frank McKeon, 2006. "p63 protects the female germ line during meiotic arrest," Nature, Nature, vol. 444(7119), pages 624-628, November.
    7. Robert E. Thurman & Eric Rynes & Richard Humbert & Jeff Vierstra & Matthew T. Maurano & Eric Haugen & Nathan C. Sheffield & Andrew B. Stergachis & Hao Wang & Benjamin Vernot & Kavita Garg & Sam John &, 2012. "The accessible chromatin landscape of the human genome," Nature, Nature, vol. 489(7414), pages 75-82, September.
    8. Josie K. Collins & Simon I. R. Lane & Julie A. Merriman & Keith T. Jones, 2015. "DNA damage induces a meiotic arrest in mouse oocytes mediated by the spindle assembly checkpoint," Nature Communications, Nature, vol. 6(1), pages 1-12, December.
    9. Stephen P. Jackson & Jiri Bartek, 2009. "The DNA-damage response in human biology and disease," Nature, Nature, vol. 461(7267), pages 1071-1078, October.
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