IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-50259-3.html
   My bibliography  Save this article

Endonucleosis mediates internalization of cytoplasm into the nucleus

Author

Listed:
  • Ourania Galanopoulou

    (Foundation for Research and Technology Hellas
    Dept. of Biology University of Crete)

  • Evangelia C. Tachmatzidi

    (Foundation for Research and Technology Hellas
    Dept. of Biology University of Crete)

  • Elena Deligianni

    (Foundation for Research and Technology Hellas)

  • Dimitris Botskaris

    (Foundation for Research and Technology Hellas
    Dept. of Biology University of Crete)

  • Kostas C. Nikolaou

    (Biomedical Sciences Research Center Alexander Fleming)

  • Sofia Gargani

    (Biomedical Sciences Research Center Alexander Fleming)

  • Yannis Dalezios

    (School of Medicine University of Crete)

  • Georges Chalepakis

    (Dept. of Biology University of Crete)

  • Iannis Talianidis

    (Foundation for Research and Technology Hellas)

Abstract

Setd8 regulates transcription elongation, mitotic DNA condensation, DNA damage response and replication licensing. Here we show that, in mitogen-stimulated liver-specific Setd8-KO mice, most of the hepatocytes are eliminated by necrosis but a significant number of them survive via entering a stage exhibiting several senescence-related features. Setd8-deficient hepatocytes had enlarged nuclei, chromosomal hyperploidy and nuclear engulfments progressing to the formation of intranuclear vesicles surrounded by nuclear lamina. These vesicles contain glycogen, cytoplasmic proteins and even entire organelles. We term this process “endonucleosis”. Intranuclear vesicles are absent in hepatocytes of Setd8/Atg5 knockout mice, suggesting that the process requires the function of the canonical autophagy machinery. Endonucleosis and hyperploidization are temporary, early events in the surviving Setd8-deficient cells. Larger vesicles break down into microvesicles over time and are eventually eliminated. The results reveal sequential events in cells with extensive DNA damage, which function as part of survival mechanisms to prevent necrotic death.

Suggested Citation

  • Ourania Galanopoulou & Evangelia C. Tachmatzidi & Elena Deligianni & Dimitris Botskaris & Kostas C. Nikolaou & Sofia Gargani & Yannis Dalezios & Georges Chalepakis & Iannis Talianidis, 2024. "Endonucleosis mediates internalization of cytoplasm into the nucleus," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-50259-3
    DOI: 10.1038/s41467-024-50259-3
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-50259-3
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-50259-3?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Bingning Dong & Ju-Seog Lee & Yun-Yong Park & Feng Yang & Ganyu Xu & Wendong Huang & Milton J. Finegold & David D. Moore, 2015. "Activating CAR and β-catenin induces uncontrolled liver growth and tumorigenesis," Nature Communications, Nature, vol. 6(1), pages 1-12, May.
    2. Muhammad Shoaib & David Walter & Peter J. Gillespie & Fanny Izard & Birthe Fahrenkrog & David Lleres & Mads Lerdrup & Jens Vilstrup Johansen & Klaus Hansen & Eric Julien & J. Julian Blow & Claus S. Sø, 2018. "Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing," Nature Communications, Nature, vol. 9(1), pages 1-11, December.
    3. Taichi Hara & Kenji Nakamura & Makoto Matsui & Akitsugu Yamamoto & Yohko Nakahara & Rika Suzuki-Migishima & Minesuke Yokoyama & Kenji Mishima & Ichiro Saito & Hideyuki Okano & Noboru Mizushima, 2006. "Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice," Nature, Nature, vol. 441(7095), pages 885-889, June.
    4. Dipak Maskey & Shida Yousefi & Inès Schmid & Inti Zlobec & Aurel Perren & Robert Friis & Hans-Uwe Simon, 2013. "ATG5 is induced by DNA-damaging agents and promotes mitotic catastrophe independent of autophagy," Nature Communications, Nature, vol. 4(1), pages 1-14, October.
    5. Maja Milanovic & Dorothy N. Y. Fan & Dimitri Belenki & J. Henry M. Däbritz & Zhen Zhao & Yong Yu & Jan R. Dörr & Lora Dimitrova & Dido Lenze & Ines A. Monteiro Barbosa & Marco A. Mendoza-Parra & Tamar, 2018. "Senescence-associated reprogramming promotes cancer stemness," Nature, Nature, vol. 553(7686), pages 96-100, January.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xiaoting Zhou & You-Kyung Lee & Xianting Li & Henry Kim & Carlos Sanchez-Priego & Xian Han & Haiyan Tan & Suiping Zhou & Yingxue Fu & Kerry Purtell & Qian Wang & Gay R. Holstein & Beisha Tang & Junmin, 2024. "Integrated proteomics reveals autophagy landscape and an autophagy receptor controlling PKA-RI complex homeostasis in neurons," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    2. Amy-Jayne Hutchings & Bita Hambrecht & Alexander Veh & Neha Jadhav Giridhar & Abdolhossein Zare & Christina Angerer & Thorben Ohnesorge & Maren Schenke & Bhuvaneish T. Selvaraj & Siddharthan Chandran , 2024. "Plekhg5 controls the unconventional secretion of Sod1 by presynaptic secretory autophagy," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    3. Laura Solé & Teresa Lobo-Jarne & Daniel Álvarez-Villanueva & Josune Alonso-Marañón & Yolanda Guillén & Marta Guix & Irene Sangrador & Catalina Rozalén & Anna Vert & Antonio Barbachano & Joan Lop & Mar, 2022. "p53 wild-type colorectal cancer cells that express a fetal gene signature are associated with metastasis and poor prognosis," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    4. Matteo Maria Naldini & Gabriele Casirati & Matteo Barcella & Paola Maria Vittoria Rancoita & Andrea Cosentino & Carolina Caserta & Francesca Pavesi & Erika Zonari & Giacomo Desantis & Diego Gilioli & , 2023. "Longitudinal single-cell profiling of chemotherapy response in acute myeloid leukemia," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
    5. Hai-Dong Xu & Dan Wu & Jin-Hua Gu & Jian-Bin Ge & Jun-Chao Wu & Rong Han & Zhong-Qin Liang & Zheng-Hong Qin, 2013. "The Pro-Survival Role of Autophagy Depends on Bcl-2 Under Nutrition Stress Conditions," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-14, May.
    6. Jiabao Liu & Ainaz Malekoltojari & Anjana Asokakumar & Vimanda Chow & Linhao Li & Hao Li & Marina Grimaldi & Nathanlown Dang & Jhenielle Campbell & Holly Barrett & Jianxian Sun & William Navarre & Der, 2024. "Diindoles produced from commensal microbiota metabolites function as endogenous CAR/Nr1i3 ligands," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    7. Humza M. Ashraf & Brianna Fernandez & Sabrina L. Spencer, 2023. "The intensities of canonical senescence biomarkers integrate the duration of cell-cycle withdrawal," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    8. Aina Maria Mas & Enrique Goñi & Igor Ruiz de los Mozos & Aida Arcas & Luisa Statello & Jovanna González & Lorea Blázquez & Wei Ting Chelsea Lee & Dipika Gupta & Álvaro Sejas & Shoko Hoshina & Alexandr, 2023. "ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    9. Alexandra K. Davies & Julian E. Alecu & Marvin Ziegler & Catherine G. Vasilopoulou & Fabrizio Merciai & Hellen Jumo & Wardiya Afshar-Saber & Mustafa Sahin & Darius Ebrahimi-Fakhari & Georg H. H. Borne, 2022. "AP-4-mediated axonal transport controls endocannabinoid production in neurons," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    10. Yoshito Minami & Atsushi Hoshino & Yusuke Higuchi & Masahide Hamaguchi & Yusaku Kaneko & Yuhei Kirita & Shunta Taminishi & Toshiyuki Nishiji & Akiyuki Taruno & Michiaki Fukui & Zoltan Arany & Satoaki , 2023. "Liver lipophagy ameliorates nonalcoholic steatohepatitis through extracellular lipid secretion," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    11. Cathy Pichol-Thievend & Oceane Anezo & Aafrin M. Pettiwala & Guillaume Bourmeau & Remi Montagne & Anne-Marie Lyne & Pierre-Olivier Guichet & Pauline Deshors & Alberto Ballestín & Benjamin Blanchard & , 2024. "VC-resist glioblastoma cell state: vessel co-option as a key driver of chemoradiation resistance," Nature Communications, Nature, vol. 15(1), pages 1-27, December.
    12. Catherine J. Greene & Jenny A. Nguyen & Samuel M. Cheung & Corey R. Arnold & Dale R. Balce & Ya Ting Wang & Adrian Soderholm & Neil McKenna & Devin Aggarwal & Rhiannon I. Campden & Benjamin W. Ewanchu, 2022. "Macrophages disseminate pathogen associated molecular patterns through the direct extracellular release of the soluble content of their phagolysosomes," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    13. Fei Sun & Nourhan Nashat Ali & Daniela Londoño-Vásquez & Constantine A. Simintiras & Huanyu Qiao & M. Sofia Ortega & Yuksel Agca & Masashi Takahashi & Rocío M. Rivera & Andrew M. Kelleher & Peter Suto, 2024. "Increased DNA damage in full-grown oocytes is correlated with diminished autophagy activation," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    14. Afshin Saffari & Barbara Brechmann & Cedric Böger & Wardiya Afshar Saber & Hellen Jumo & Dosh Whye & Delaney Wood & Lara Wahlster & Julian E. Alecu & Marvin Ziegler & Marlene Scheffold & Kellen Winden, 2024. "High-content screening identifies a small molecule that restores AP-4-dependent protein trafficking in neuronal models of AP-4-associated hereditary spastic paraplegia," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
    15. Huiru Bai & Xiaoqin Liu & Meizhen Lin & Yuan Meng & Ruolan Tang & Yajing Guo & Nan Li & Michael F. Clarke & Shang Cai, 2024. "Progressive senescence programs induce intrinsic vulnerability to aging-related female breast cancer," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    16. Barbara Baldo & Rana Soylu & Åsa Petersén, 2013. "Maintenance of Basal Levels of Autophagy in Huntington’s Disease Mouse Models Displaying Metabolic Dysfunction," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-15, December.
    17. Athina Varveri & Miranta Papadopoulou & Zacharias Papadovasilakis & Ewoud B. Compeer & Aigli-Ioanna Legaki & Anastasios Delis & Vasileia Damaskou & Louis Boon & Sevasti Papadogiorgaki & Martina Samiot, 2024. "Immunological synapse formation between T regulatory cells and cancer-associated fibroblasts promotes tumour development," Nature Communications, Nature, vol. 15(1), pages 1-19, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-50259-3. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.