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Reentrant DNA shells tune polyphosphate condensate size

Author

Listed:
  • Ravi Chawla

    (The Scripps Research Institute
    Chakra Techworks Inc.)

  • Jenna K. A. Tom

    (The Scripps Research Institute)

  • Tumara Boyd

    (The Scripps Research Institute)

  • Nicholas H. Tu

    (The Scripps Research Institute)

  • Tanxi Bai

    (The Scripps Research Institute)

  • Danielle A. Grotjahn

    (The Scripps Research Institute)

  • Donghyun Park

    (The Scripps Research Institute)

  • Ashok A. Deniz

    (The Scripps Research Institute)

  • Lisa R. Racki

    (The Scripps Research Institute)

Abstract

The inorganic biopolymer polyphosphate (polyP) occurs in all domains of life and affects myriad cellular processes. A longstanding observation is polyP’s frequent proximity to chromatin, and, in many bacteria, its occurrence as magnesium (Mg2+)-enriched condensates embedded in the nucleoid region, particularly in response to stress. The physical basis of the interaction between polyP, DNA and Mg2+, and the resulting effects on the organization of the nucleoid and polyP condensates, remain poorly understood. Here, using a minimal system of polyP, Mg2+, and DNA, we find that DNA can form shells around polyP-Mg2+ condensates. These shells show reentrant behavior, that is, they form within a window of Mg2+ concentrations, representing a tunable architecture with potential relevance in other multicomponent condensates. This surface association tunes condensate size and DNA morphology in a manner dependent on DNA length and concentration, even at DNA concentrations orders of magnitude lower than found in the cell. Our work also highlights the remarkable capacity of two primordial inorganic species to organize DNA.

Suggested Citation

  • Ravi Chawla & Jenna K. A. Tom & Tumara Boyd & Nicholas H. Tu & Tanxi Bai & Danielle A. Grotjahn & Donghyun Park & Ashok A. Deniz & Lisa R. Racki, 2024. "Reentrant DNA shells tune polyphosphate condensate size," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-53469-x
    DOI: 10.1038/s41467-024-53469-x
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