Sequence-to-sequence translation from mass spectra to peptides with a transformer model
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DOI: 10.1038/s41467-024-49731-x
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References listed on IDEAS
- Kaiyuan Liu & Yuzhen Ye & Sujun Li & Haixu Tang, 2023. "Accurate de novo peptide sequencing using fully convolutional neural networks," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
- Ruedi Aebersold & Matthias Mann, 2016. "Mass-spectrometric exploration of proteome structure and function," Nature, Nature, vol. 537(7620), pages 347-355, September.
- Charles R. Harris & K. Jarrod Millman & Stéfan J. Walt & Ralf Gommers & Pauli Virtanen & David Cournapeau & Eric Wieser & Julian Taylor & Sebastian Berg & Nathaniel J. Smith & Robert Kern & Matti Picu, 2020. "Array programming with NumPy," Nature, Nature, vol. 585(7825), pages 357-362, September.
- Lauren E. Stopfer & Joshua M. Mesfin & Brian A. Joughin & Douglas A. Lauffenburger & Forest M. White, 2020. "Multiplexed relative and absolute quantitative immunopeptidomics reveals MHC I repertoire alterations induced by CDK4/6 inhibition," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
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- Xiang Zhang & Tianze Ling & Zhi Jin & Sheng Xu & Zhiqiang Gao & Boyan Sun & Zijie Qiu & Jiaqi Wei & Nanqing Dong & Guangshuai Wang & Guibin Wang & Leyuan Li & Muhammad Abdul-Mageed & Laks V. S. Lakshm, 2025. "π-PrimeNovo: an accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
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