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Enhancing antibody responses by multivalent antigen display on thymus-independent DNA origami scaffolds

Author

Listed:
  • Eike-Christian Wamhoff

    (Massachusetts Institute of Technology)

  • Larance Ronsard

    (Massachusetts Institute of Technology and Harvard University)

  • Jared Feldman

    (Massachusetts Institute of Technology and Harvard University)

  • Grant A. Knappe

    (Massachusetts Institute of Technology
    Massachusetts Institute of Technology)

  • Blake M. Hauser

    (Massachusetts Institute of Technology and Harvard University)

  • Anna Romanov

    (Massachusetts Institute of Technology
    Massachusetts Institute of Technology)

  • James Brett Case

    (Washington University School of Medicine)

  • Shilpa Sanapala

    (Washington University School of Medicine)

  • Evan C. Lam

    (Massachusetts Institute of Technology and Harvard University)

  • Kerri J. St. Denis

    (Massachusetts Institute of Technology and Harvard University)

  • Julie Boucau

    (Massachusetts Institute of Technology and Harvard University)

  • Amy K. Barczak

    (Massachusetts Institute of Technology and Harvard University)

  • Alejandro B. Balazs

    (Massachusetts Institute of Technology and Harvard University)

  • Michael S. Diamond

    (Washington University School of Medicine
    Washington University School of Medicine
    Washington University School of Medicine)

  • Aaron G. Schmidt

    (Massachusetts Institute of Technology and Harvard University
    Harvard Medical School)

  • Daniel Lingwood

    (Massachusetts Institute of Technology and Harvard University)

  • Mark Bathe

    (Massachusetts Institute of Technology
    Broad Institute of MIT and Harvard
    Harvard Medical School)

Abstract

Protein-based virus-like particles (P-VLPs) are commonly used to spatially organize antigens and enhance humoral immunity through multivalent antigen display. However, P-VLPs are thymus-dependent antigens that are themselves immunogenic and can induce B cell responses that may neutralize the platform. Here, we investigate thymus-independent DNA origami as an alternative material for multivalent antigen display using the receptor binding domain (RBD) of the SARS-CoV-2 spike protein, the primary target of neutralizing antibody responses. Sequential immunization of mice with DNA-based VLPs (DNA-VLPs) elicits protective neutralizing antibodies to SARS-CoV-2 in a manner that depends on the valency of the antigen displayed and on T cell help. Importantly, the immune sera do not contain boosted, class-switched antibodies against the DNA scaffold, in contrast to P-VLPs that elicit strong B cell memory against both the target antigen and the scaffold. Thus, DNA-VLPs enhance target antigen immunogenicity without generating scaffold-directed immunity and thereby offer an important alternative material for particulate vaccine design.

Suggested Citation

  • Eike-Christian Wamhoff & Larance Ronsard & Jared Feldman & Grant A. Knappe & Blake M. Hauser & Anna Romanov & James Brett Case & Shilpa Sanapala & Evan C. Lam & Kerri J. St. Denis & Julie Boucau & Amy, 2024. "Enhancing antibody responses by multivalent antigen display on thymus-independent DNA origami scaffolds," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-44869-0
    DOI: 10.1038/s41467-024-44869-0
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    References listed on IDEAS

    as
    1. Facundo D. Batista & Dagmar Iber & Michael S. Neuberger, 2001. "B cells acquire antigen from target cells after synapse formation," Nature, Nature, vol. 411(6836), pages 489-494, May.
    2. Jing-Hui Tian & Nita Patel & Robert Haupt & Haixia Zhou & Stuart Weston & Holly Hammond & James Logue & Alyse D. Portnoff & James Norton & Mimi Guebre-Xabier & Bin Zhou & Kelsey Jacobson & Sonia Macie, 2021. "SARS-CoV-2 spike glycoprotein vaccine candidate NVX-CoV2373 immunogenicity in baboons and protection in mice," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    3. Ariën Schiepers & Marije F. L. Wout & Allison J. Greaney & Trinity Zang & Hiromi Muramatsu & Paulo J. C. Lin & Ying K. Tam & Luka Mesin & Tyler N. Starr & Paul D. Bieniasz & Norbert Pardi & Jesse D. B, 2023. "Molecular fate-mapping of serum antibody responses to repeat immunization," Nature, Nature, vol. 615(7952), pages 482-489, March.
    4. Bruno E. Correia & John T. Bates & Rebecca J. Loomis & Gretchen Baneyx & Chris Carrico & Joseph G. Jardine & Peter Rupert & Colin Correnti & Oleksandr Kalyuzhniy & Vinayak Vittal & Mary J. Connell & E, 2014. "Proof of principle for epitope-focused vaccine design," Nature, Nature, vol. 507(7491), pages 201-206, March.
    5. Nandhini Ponnuswamy & Maartje M. C. Bastings & Bhavik Nathwani & Ju Hee Ryu & Leo Y. T. Chou & Mathias Vinther & Weiwei Aileen Li & Frances M. Anastassacos & David J. Mooney & William M. Shih, 2017. "Oligolysine-based coating protects DNA nanostructures from low-salt denaturation and nuclease degradation," Nature Communications, Nature, vol. 8(1), pages 1-9, August.
    6. Daniel Lingwood & Patrick M. McTamney & Hadi M. Yassine & James R. R. Whittle & Xiaoti Guo & Jeffrey C. Boyington & Chih-Jen Wei & Gary J. Nabel, 2012. "Structural and genetic basis for development of broadly neutralizing influenza antibodies," Nature, Nature, vol. 489(7417), pages 566-570, September.
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