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Dipeptide coacervates as artificial membraneless organelles for bioorthogonal catalysis

Author

Listed:
  • Shoupeng Cao

    (Max Planck Institute for Polymer Research)

  • Tsvetomir Ivanov

    (Max Planck Institute for Polymer Research)

  • Julian Heuer

    (Max Planck Institute for Polymer Research)

  • Calum T. J. Ferguson

    (Max Planck Institute for Polymer Research
    University of Birmingham)

  • Katharina Landfester

    (Max Planck Institute for Polymer Research)

  • Lucas Caire da Silva

    (Max Planck Institute for Polymer Research
    McGill University)

Abstract

Artificial organelles can manipulate cellular functions and introduce non-biological processes into cells. Coacervate droplets have emerged as a close analog of membraneless cellular organelles. Their biomimetic properties, such as molecular crowding and selective partitioning, make them promising components for designing cell-like materials. However, their use as artificial organelles has been limited by their complex molecular structure, limited control over internal microenvironment properties, and inherent colloidal instability. Here we report the design of dipeptide coacervates that exhibit enhanced stability, biocompatibility, and a hydrophobic microenvironment. The hydrophobic character facilitates the encapsulation of hydrophobic species, including transition metal-based catalysts, enhancing their efficiency in aqueous environments. Dipeptide coacervates carrying a metal-based catalyst are incorporated as active artificial organelles in cells and trigger an internal non-biological chemical reaction. The development of coacervates with a hydrophobic microenvironment opens an alternative avenue in the field of biomimetic materials with applications in catalysis and synthetic biology.

Suggested Citation

  • Shoupeng Cao & Tsvetomir Ivanov & Julian Heuer & Calum T. J. Ferguson & Katharina Landfester & Lucas Caire da Silva, 2024. "Dipeptide coacervates as artificial membraneless organelles for bioorthogonal catalysis," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-023-44278-9
    DOI: 10.1038/s41467-023-44278-9
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    References listed on IDEAS

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    1. Avigail Baruch Leshem & Sian Sloan-Dennison & Tlalit Massarano & Shavit Ben-David & Duncan Graham & Karen Faulds & Hugo E. Gottlieb & Jordan H. Chill & Ayala Lampel, 2023. "Biomolecular condensates formed by designer minimalistic peptides," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    2. Raghav R. Poudyal & Rebecca M. Guth-Metzler & Andrew J. Veenis & Erica A. Frankel & Christine D. Keating & Philip C. Bevilacqua, 2019. "Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    3. Wiggert J. Altenburg & N. Amy Yewdall & Daan F. M. Vervoort & Marleen H. M. E. Stevendaal & Alexander F. Mason & Jan C. M. Hest, 2020. "Programmed spatial organization of biomacromolecules into discrete, coacervate-based protocells," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
    4. Pierangelo Gobbo & Liangfei Tian & B. V. V. S Pavan Kumar & Samuel Turvey & Mattia Cattelan & Avinash J. Patil & Mauro Carraro & Marcella Bonchio & Stephen Mann, 2020. "Catalytic processing in ruthenium-based polyoxometalate coacervate protocells," Nature Communications, Nature, vol. 11(1), pages 1-9, December.
    5. Siddharth Deshpande & Frank Brandenburg & Anson Lau & Mart G. F. Last & Willem Kasper Spoelstra & Louis Reese & Sreekar Wunnava & Marileen Dogterom & Cees Dekker, 2019. "Spatiotemporal control of coacervate formation within liposomes," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
    6. Fatma Pir Cakmak & Saehyun Choi & McCauley O. Meyer & Philip C. Bevilacqua & Christine D. Keating, 2020. "Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
    7. Björn Drobot & Juan M. Iglesias-Artola & Kristian Vay & Viktoria Mayr & Mrityunjoy Kar & Moritz Kreysing & Hannes Mutschler & T-Y Dora Tang, 2018. "Compartmentalised RNA catalysis in membrane-free coacervate protocells," Nature Communications, Nature, vol. 9(1), pages 1-9, December.
    8. Carsten Donau & Fabian Späth & Marilyne Sosson & Brigitte A. K. Kriebisch & Fabian Schnitter & Marta Tena-Solsona & Hyun-Seo Kang & Elia Salibi & Michael Sattler & Hannes Mutschler & Job Boekhoven, 2020. "Active coacervate droplets as a model for membraneless organelles and protocells," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
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