IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-43049-w.html
   My bibliography  Save this article

Xylose and shikimate transporters facilitates microbial consortium as a chassis for benzylisoquinoline alkaloid production

Author

Listed:
  • Meirong Gao

    (Iowa State University
    Iowa State University)

  • Yuxin Zhao

    (Iowa State University
    Iowa State University)

  • Zhanyi Yao

    (Iowa State University
    Iowa State University)

  • Qianhe Su

    (Iowa State University)

  • Payton Van Beek

    (Iowa State University)

  • Zengyi Shao

    (Iowa State University
    Iowa State University
    Iowa State University
    Iowa State University)

Abstract

Plant-sourced aromatic amino acid (AAA) derivatives are a vast group of compounds with broad applications. Here, we present the development of a yeast consortium for efficient production of (S)-norcoclaurine, the key precursor for benzylisoquinoline alkaloid biosynthesis. A xylose transporter enables the concurrent mixed-sugar utilization in Scheffersomyces stipitis, which plays a crucial role in enhancing the flux entering the highly regulated shikimate pathway located upstream of AAA biosynthesis. Two quinate permeases isolated from Aspergillus niger facilitates shikimate translocation to the co-cultured Saccharomyces cerevisiae that converts shikimate to (S)-norcoclaurine, resulting in the maximal titer (11.5 mg/L), nearly 110-fold higher than the titer reported for an S. cerevisiae monoculture. Our findings magnify the potential of microbial consortium platforms for the economical de novo synthesis of complex compounds, where pathway modularization and compartmentalization in distinct specialty strains enable effective fine-tuning of long biosynthetic pathways and diminish intermediate buildup, thereby leading to increases in production.

Suggested Citation

  • Meirong Gao & Yuxin Zhao & Zhanyi Yao & Qianhe Su & Payton Van Beek & Zengyi Shao, 2023. "Xylose and shikimate transporters facilitates microbial consortium as a chassis for benzylisoquinoline alkaloid production," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43049-w
    DOI: 10.1038/s41467-023-43049-w
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-43049-w
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-43049-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Xianglai Li & Zhao Zhou & Wenna Li & Yajun Yan & Xiaolin Shen & Jia Wang & Xinxiao Sun & Qipeng Yuan, 2022. "Design of stable and self-regulated microbial consortia for chemical synthesis," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    2. Quanli Liu & Tao Yu & Xiaowei Li & Yu Chen & Kate Campbell & Jens Nielsen & Yun Chen, 2019. "Rewiring carbon metabolism in yeast for high level production of aromatic chemicals," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    3. Michael E. Pyne & Kaspar Kevvai & Parbir S. Grewal & Lauren Narcross & Brian Choi & Leanne Bourgeois & John E. Dueber & Vincent J. J. Martin, 2020. "A yeast platform for high-level synthesis of tetrahydroisoquinoline alkaloids," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
    4. Shiri Freilich & Raphy Zarecki & Omer Eilam & Ella Shtifman Segal & Christopher S. Henry & Martin Kupiec & Uri Gophna & Roded Sharan & Eytan Ruppin, 2011. "Competitive and cooperative metabolic interactions in bacterial communities," Nature Communications, Nature, vol. 2(1), pages 1-7, September.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Quanli Liu & Yi Liu & Gang Li & Otto Savolainen & Yun Chen & Jens Nielsen, 2021. "De novo biosynthesis of bioactive isoflavonoids by engineered yeast cell factories," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    2. Xianglai Li & Zhao Zhou & Wenna Li & Yajun Yan & Xiaolin Shen & Jia Wang & Xinxiao Sun & Qipeng Yuan, 2022. "Design of stable and self-regulated microbial consortia for chemical synthesis," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    3. Jordán, Ferenc, 2022. "The network perspective: Vertical connections linking organizational levels," Ecological Modelling, Elsevier, vol. 473(C).
    4. Michael E. Pyne & James A. Bagley & Lauren Narcross & Kaspar Kevvai & Kealan Exley & Meghan Davies & Qingzhao Wang & Malcolm Whiteway & Vincent J. J. Martin, 2023. "Screening non-conventional yeasts for acid tolerance and engineering Pichia occidentalis for production of muconic acid," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Hongjiao Zhang & Zixin Li & Shuang Zhou & Shu-Ming Li & Huomiao Ran & Zili Song & Tao Yu & Wen-Bing Yin, 2022. "A fungal NRPS-PKS enzyme catalyses the formation of the flavonoid naringenin," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    6. Tomas Hessler & Robert J. Huddy & Rohan Sachdeva & Shufei Lei & Susan T. L. Harrison & Spencer Diamond & Jillian F. Banfield, 2023. "Vitamin interdependencies predicted by metagenomics-informed network analyses and validated in microbial community microcosms," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    7. Sean M Gibbons & Sean M Kearney & Chris S Smillie & Eric J Alm, 2017. "Two dynamic regimes in the human gut microbiome," PLOS Computational Biology, Public Library of Science, vol. 13(2), pages 1-20, February.
    8. Xiaokan Guo & James Q Boedicker, 2016. "The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community," PLOS Computational Biology, Public Library of Science, vol. 12(9), pages 1-13, September.
    9. Yanyan Zhou & Donghui Liu & Fengqiao Li & Yuanhua Dong & Zhili Jin & Yangwenke Liao & Xiaohui Li & Shuguang Peng & Manuel Delgado-Baquerizo & Xiaogang Li, 2024. "Superiority of native soil core microbiomes in supporting plant growth," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    10. Vanessa R. Marcelino & Caitlin Welsh & Christian Diener & Emily L. Gulliver & Emily L. Rutten & Remy B. Young & Edward M. Giles & Sean M. Gibbons & Chris Greening & Samuel C. Forster, 2023. "Disease-specific loss of microbial cross-feeding interactions in the human gut," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    11. Liu, Ruo-Ying & Lan, Hai-Na & Liu, Zhi-Hua & Li, Bing-Zhi & Yuan, Ying-Jin, 2024. "Microbial valorization of lignin toward coumarins: Challenges and perspectives," Renewable and Sustainable Energy Reviews, Elsevier, vol. 191(C).
    12. Björn D. M. Bean & Colleen J. Mulvihill & Riddhiman K. Garge & Daniel R. Boutz & Olivier Rousseau & Brendan M. Floyd & William Cheney & Elizabeth C. Gardner & Andrew D. Ellington & Edward M. Marcotte , 2022. "Functional expression of opioid receptors and other human GPCRs in yeast engineered to produce human sterols," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    13. Itay Mayrose & Shiri Freilich, 2015. "The Interplay between Scientific Overlap and Cooperation and the Resulting Gain in Co-Authorship Interactions," PLOS ONE, Public Library of Science, vol. 10(9), pages 1-10, September.
    14. Yue Gao & Fei Li & Zhengshan Luo & Zhiwei Deng & Yan Zhang & Zhenbo Yuan & Changmei Liu & Yijian Rao, 2024. "Modular assembly of an artificially concise biocatalytic cascade for the manufacture of phenethylisoquinoline alkaloids," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    15. Chengyao Xia & Yuqiang Zhao & Lei Zhang & Xu Li & Yang Cheng & Dongming Wang & Changsheng Xu & Mengyi Qi & Jihong Wang & Xiangrui Guo & Xianfeng Ye & Yan Huang & Danyu Shen & Daolong Dou & Hui Cao & Z, 2023. "Myxobacteria restrain Phytophthora invasion by scavenging thiamine in soybean rhizosphere via outer membrane vesicle-secreted thiaminase I," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    16. Christopher J. Vavricka & Shunsuke Takahashi & Naoki Watanabe & Musashi Takenaka & Mami Matsuda & Takanobu Yoshida & Ryo Suzuki & Hiromasa Kiyota & Jianyong Li & Hiromichi Minami & Jun Ishii & Kenji T, 2022. "Machine learning discovery of missing links that mediate alternative branches to plant alkaloids," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    17. Matthias Bec & Sylvain Pouzet & Céline Cordier & Simon Barral & Vittore Scolari & Benoit Sorre & Alvaro Banderas & Pascal Hersen, 2024. "Optogenetic spatial patterning of cooperation in yeast populations," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    18. Ning Qin & Lingyun Li & Xiaozhen Wan & Xu Ji & Yu Chen & Chaokun Li & Ping Liu & Yijie Zhang & Weijie Yang & Junfeng Jiang & Jianye Xia & Shuobo Shi & Tianwei Tan & Jens Nielsen & Yun Chen & Zihe Liu, 2024. "Increased CO2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    19. Yuanwei Gou & Dongfang Li & Minghui Zhao & Mengxin Li & Jiaojiao Zhang & Yilian Zhou & Feng Xiao & Gaofei Liu & Haote Ding & Chenfan Sun & Cuifang Ye & Chang Dong & Jucan Gao & Di Gao & Zehua Bao & Le, 2024. "Intein-mediated temperature control for complete biosynthesis of sanguinarine and its halogenated derivatives in yeast," Nature Communications, Nature, vol. 15(1), pages 1-15, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43049-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.