IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-42810-5.html
   My bibliography  Save this article

Engineering a scalable and orthogonal platform for synthetic communication in mammalian cells

Author

Listed:
  • Anna-Maria Makri Pistikou

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

  • Glenn A. O. Cremers

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

  • Bryan L. Nathalia

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

  • Theodorus J. Meuleman

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

  • Bas W. A. Bögels

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

  • Bruno V. Eijkens

    (Eindhoven University of Technology
    Eindhoven University of Technology)

  • Anne Dreu

    (Eindhoven University of Technology)

  • Maarten T. H. Bezembinder

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

  • Oscar M. J. A. Stassen

    (Eindhoven University of Technology)

  • Carlijn C. V. Bouten

    (Eindhoven University of Technology
    Eindhoven University of Technology)

  • Maarten Merkx

    (Eindhoven University of Technology
    Eindhoven University of Technology)

  • Roman Jerala

    (National Institute of Chemistry
    EN-FIST Centre of Excellence)

  • Tom F. A. Greef

    (Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology
    Eindhoven University of Technology)

Abstract

The rational design and implementation of synthetic mammalian communication systems can unravel fundamental design principles of cell communication circuits and offer a framework for engineering of designer cell consortia with potential applications in cell therapeutics. Here, we develop the foundations of an orthogonal, and scalable mammalian synthetic communication platform that exploits the programmability of synthetic receptors and selective affinity and tunability of diffusing coiled-coil peptides. Leveraging the ability of coiled-coils to exclusively bind to a cognate receptor, we demonstrate orthogonal receptor activation and Boolean logic operations at the receptor level. We show intercellular communication based on synthetic receptors and secreted multidomain coiled-coils and demonstrate a three-cell population system that can perform AND gate logic. Finally, we show CC-GEMS receptor-dependent therapeutic protein expression. Our work provides a modular and scalable framework for the engineering of complex cell consortia, with the potential to expand the aptitude of cell therapeutics and diagnostics.

Suggested Citation

  • Anna-Maria Makri Pistikou & Glenn A. O. Cremers & Bryan L. Nathalia & Theodorus J. Meuleman & Bas W. A. Bögels & Bruno V. Eijkens & Anne Dreu & Maarten T. H. Bezembinder & Oscar M. J. A. Stassen & Car, 2023. "Engineering a scalable and orthogonal platform for synthetic communication in mammalian cells," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42810-5
    DOI: 10.1038/s41467-023-42810-5
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-42810-5
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-42810-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Timothy Frei & Federica Cella & Fabiana Tedeschi & Joaquín Gutiérrez & Guy-Bart Stan & Mustafa Khammash & Velia Siciliano, 2020. "Characterization and mitigation of gene expression burden in mammalian cells," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    2. Daniel Bojar & Leo Scheller & Ghislaine Charpin-El Hamri & Mingqi Xie & Martin Fussenegger, 2018. "Caffeine-inducible gene switches controlling experimental diabetes," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    3. Nathan H. Kipniss & P. C. Dave P. Dingal & Timothy R. Abbott & Yuchen Gao & Haifeng Wang & Antonia A. Dominguez & Louai Labanieh & Lei S. Qi, 2017. "Engineering cell sensing and responses using a GPCR-coupled CRISPR-Cas system," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
    4. Anusha Kalbasi & Mikko Siurala & Leon L. Su & Mito Tariveranmoshabad & Lora K. Picton & Pranali Ravikumar & Peng Li & Jian-Xin Lin & Helena Escuin-Ordinas & Tong Da & Sarah V. Kremer & Amy L. Sun & So, 2022. "Potentiating adoptive cell therapy using synthetic IL-9 receptors," Nature, Nature, vol. 607(7918), pages 360-365, July.
    5. Anusha Kalbasi & Mikko Siurala & Leon L. Su & Mito Tariveranmoshabad & Lora K. Picton & Pranali Ravikumar & Peng Li & Jian-Xin Lin & Helena Escuin-Ordinas & Tong Da & Sarah V. Kremer & Amy L. Sun & So, 2022. "Publisher Correction: Potentiating adoptive cell therapy using synthetic IL-9 receptors," Nature, Nature, vol. 612(7938), pages 10-10, December.
    6. Arne Praznik & Tina Fink & Nik Franko & Jan Lonzarić & Mojca Benčina & Nina Jerala & Tjaša Plaper & Samo Roškar & Roman Jerala, 2022. "Regulation of protein secretion through chemical regulation of endoplasmic reticulum retention signal cleavage," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    7. Jang Hwan Cho & Atsushi Okuma & Katri Sofjan & Seunghee Lee & James J. Collins & Wilson W. Wong, 2021. "Engineering advanced logic and distributed computing in human CAR immune cells," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    8. Lingchong You & Robert Sidney Cox & Ron Weiss & Frances H. Arnold, 2004. "Programmed population control by cell–cell communication and regulated killing," Nature, Nature, vol. 428(6985), pages 868-871, April.
    9. M. Omar Din & Tal Danino & Arthur Prindle & Matt Skalak & Jangir Selimkhanov & Kaitlin Allen & Ellixis Julio & Eta Atolia & Lev S. Tsimring & Sangeeta N. Bhatia & Jeff Hasty, 2016. "Synchronized cycles of bacterial lysis for in vivo delivery," Nature, Nature, vol. 536(7614), pages 81-85, August.
    10. Roberto Di Blasi & Masue M. Marbiah & Velia Siciliano & Karen Polizzi & Francesca Ceroni, 2021. "A call for caution in analysing mammalian co-transfection experiments and implications of resource competition in data misinterpretation," Nature Communications, Nature, vol. 12(1), pages 1-6, December.
    11. Ross D. Jones & Yili Qian & Velia Siciliano & Breanna DiAndreth & Jin Huh & Ron Weiss & Domitilla Del Vecchio, 2020. "An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
    12. Zibo Chen & Scott E. Boyken & Mengxuan Jia & Florian Busch & David Flores-Solis & Matthew J. Bick & Peilong Lu & Zachary L. VanAernum & Aniruddha Sahasrabuddhe & Robert A. Langan & Sherry Bermeo & T. , 2019. "Programmable design of orthogonal protein heterodimers," Nature, Nature, vol. 565(7737), pages 106-111, January.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Roberto Di Blasi & Mara Pisani & Fabiana Tedeschi & Masue M. Marbiah & Karen Polizzi & Simone Furini & Velia Siciliano & Francesca Ceroni, 2023. "Resource-aware construct design in mammalian cells," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    2. Chenrui Qin & Yanhui Xiang & Jie Liu & Ruilin Zhang & Ziming Liu & Tingting Li & Zhi Sun & Xiaoyi Ouyang & Yeqing Zong & Haoqian M. Zhang & Qi Ouyang & Long Qian & Chunbo Lou, 2023. "Precise programming of multigene expression stoichiometry in mammalian cells by a modular and programmable transcriptional system," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    3. Ugur Uslu & Lijun Sun & Sofia Castelli & Amanda V. Finck & Charles-Antoine Assenmacher & Regina M. Young & Zhijian J. Chen & Carl H. June, 2024. "The STING agonist IMSA101 enhances chimeric antigen receptor T cell function by inducing IL-18 secretion," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    4. Carlos Barajas & Hsin-Ho Huang & Jesse Gibson & Luis Sandoval & Domitilla Vecchio, 2022. "Feedforward growth rate control mitigates gene activation burden," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    5. Mohamed Mahameed & Pengli Wang & Shuai Xue & Martin Fussenegger, 2022. "Engineering receptors in the secretory pathway for orthogonal signalling control," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    6. Ross D. Jones & Yili Qian & Katherine Ilia & Benjamin Wang & Michael T. Laub & Domitilla Del Vecchio & Ron Weiss, 2022. "Robust and tunable signal processing in mammalian cells via engineered covalent modification cycles," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    7. Yuanli Gao & Lei Wang & Baojun Wang, 2023. "Customizing cellular signal processing by synthetic multi-level regulatory circuits," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    8. Yunmin Yang & Binbin Chu & Jiayi Cheng & Jiali Tang & Bin Song & Houyu Wang & Yao He, 2022. "Bacteria eat nanoprobes for aggregation-enhanced imaging and killing diverse microorganisms," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    9. Simeon D. Castle & Michiel Stock & Thomas E. Gorochowski, 2024. "Engineering is evolution: a perspective on design processes to engineer biology," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    10. Keun-Young Kim & Jin Wang, 2007. "Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch," PLOS Computational Biology, Public Library of Science, vol. 3(3), pages 1-13, March.
    11. Candice R. Gurbatri & Georgette A. Radford & Laura Vrbanac & Jongwon Im & Elaine M. Thomas & Courtney Coker & Samuel R. Taylor & YoungUk Jang & Ayelet Sivan & Kyu Rhee & Anas A. Saleh & Tiffany Chien , 2024. "Engineering tumor-colonizing E. coli Nissle 1917 for detection and treatment of colorectal neoplasia," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    12. Lucas Henrion & Juan Andres Martinez & Vincent Vandenbroucke & Mathéo Delvenne & Samuel Telek & Andrew Zicler & Alexander Grünberger & Frank Delvigne, 2023. "Fitness cost associated with cell phenotypic switching drives population diversification dynamics and controllability," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    13. Rocío Castellanos-Rueda & Raphaël B. Roberto & Florian Bieberich & Fabrice S. Schlatter & Darya Palianina & Oanh T. P. Nguyen & Edo Kapetanovic & Heinz Läubli & Andreas Hierlemann & Nina Khanna & Sai , 2022. "speedingCARs: accelerating the engineering of CAR T cells by signaling domain shuffling and single-cell sequencing," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    14. Yu-Yu Cheng & Zhengyi Chen & Xinyun Cao & Tyler D. Ross & Tanya G. Falbel & Briana M. Burton & Ophelia S. Venturelli, 2023. "Programming bacteria for multiplexed DNA detection," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    15. Tingting Cui & Yu Zhang & Geng Qin & Yue Wei & Jie Yang & Ying Huang & Jinsong Ren & Xiaogang Qu, 2023. "A neutrophil mimicking metal-porphyrin-based nanodevice loaded with porcine pancreatic elastase for cancer therapy," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    16. Andras Gyorgy, 2023. "Competition and evolutionary selection among core regulatory motifs in gene expression control," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    17. Moy, Tiago & Pinto, Italo’Ivo L.D. & Rosas, Alexandre, 2020. "Finite number fluctuations in a three-state model with growing population," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 555(C).
    18. Breanna DiAndreth & Noreen Wauford & Eileen Hu & Sebastian Palacios & Ron Weiss, 2022. "PERSIST platform provides programmable RNA regulation using CRISPR endoRNases," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    19. Alexander E. Vlahos & Jeewoo Kang & Carlos A. Aldrete & Ronghui Zhu & Lucy S. Chong & Michael B. Elowitz & Xiaojing J. Gao, 2022. "Protease-controlled secretion and display of intercellular signals," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    20. Stanislav Anastassov & Maurice Filo & Ching-Hsiang Chang & Mustafa Khammash, 2023. "A cybergenetic framework for engineering intein-mediated integral feedback control systems," Nature Communications, Nature, vol. 14(1), pages 1-16, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42810-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.